neurod6 (Xenopus tropicalis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 XB-GENE-969227 T051925_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NEUROD1
M04148_2.00
Homo sapiens
RMCATATGKYVNNNTAWTT

AAWTANNNBRMCATATGKY
SELEX
Yin et al.(2017)
NEUROD1_FL_HT-SELEX
0.894 0.923
NEUROD1
M08057_2.00
Homo sapiens
NNVCAGATGGNNN

NNNCCATCTGBNN
ChIP-seq
Mathelier et al.(2014)
MA1109.1
0.894 0.923
NEUROD1
M08735_2.00
Homo sapiens
RVCAGATGGY

RCCATCTGBY
Misc
Kulakovskiy et al.(2013)
NDF1_HUMAN.H11MO.0.A
0.894 0.923
Neurod1
M08764_2.00
Mus musculus
RVCAGATGGY

RCCATCTGBY
Misc
Kulakovskiy et al.(2013)
NDF1_MOUSE.H11MO.0.A
0.894 0.923
Neurod1
M09474_2.00
Mus musculus
RVCAGATGGY

RCCATCTGBY
Misc
Heinz et al.(2010)
Islet-NeuroD1_GSE30298
0.894 0.923
NEUROD1
M09873_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NEUROD_01
0.894 0.923
NEUROD1
M09874_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NEUROD_02
0.894 0.923
NEUROD1
M04149_2.00
Homo sapiens
RVCATATGBYVYNBTAWTW

WAWTAVNRBRVCATATGBY
SELEX
Yin et al.(2017)
NEUROD1_FL_Methyl-HT-SELEX
0.894 0.923
NEUROD2
M02795_2.00
Homo sapiens
RVCATATGKY

RMCATATGBY
SELEX
Jolma et al.(2013)
NEUROD2_1
0.859 0.904
NEUROD2
M04160_2.00
Homo sapiens
RVCATATGKY

RMCATATGBY
SELEX
Yin et al.(2017)
NEUROD2_FL_HT-SELEX
0.859 0.904
NEUROD2
M08737_2.00
Homo sapiens
RRCAGMTGG

CCAKCTGYY
Misc
Kulakovskiy et al.(2013)
NDF2_HUMAN.H11MO.0.B
0.859 0.904
Neurod2
M08770_2.00
Mus musculus
RVCAGATGGB

VCCATCTGBY
Misc
Kulakovskiy et al.(2013)
NDF2_MOUSE.H11MO.0.A
0.859 0.904
NEUROD2
M04161_2.00
Homo sapiens
RMCATATGBY

RVCATATGKY
SELEX
Yin et al.(2017)
NEUROD2_FL_Methyl-HT-SELEX
0.859 0.904
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI21278 bHLH 95 147

Links

Other bHLH family TFs
Other Xenopus tropicalis TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Alligator_sinensis_CCG001228.1 Alligator sinensis Alligator_sinensis_CCG001228.1 N 0.000
Cmyd_10002847 Chelonia mydas Cmyd_10002847 N 0.000
TCF24 Anolis carolinensis ENSACAG00000016461 N 0.000
ENSAMEG00000001827 Ailuropoda melanoleuca ENSAMEG00000001827 N 0.000
ENSAMEG00000012533 Ailuropoda melanoleuca ENSAMEG00000012533 N 0.000
ENSAMXG00000013680 Astyanax mexicanus ENSAMXG00000013680 N 0.000
TCF23 Bos taurus ENSBTAG00000014813 N 0.000
TCF24 Canis familiaris ENSCAFG00000029615 N 0.000
TCF23 Canis familiaris ENSCAFG00000030192 N 0.000
TCF23 Callithrix jacchus ENSCJAG00000001198 N 0.000
ENSCPOG00000003785 Cavia porcellus ENSCPOG00000003785 N 0.000
TCF24 Cavia porcellus ENSCPOG00000014534 N 0.000
ENSCSAG00000014111 Chlorocebus sabaeus ENSCSAG00000014111 N 0.000
TCF24 Danio rerio ENSDARG00000086944 N 0.000
TCF24 Dasypus novemcinctus ENSDNOG00000045736 N 0.000
Tcf23 Dipodomys ordii ENSDORG00000014403 N 0.000
TCF23 Equus caballus ENSECAG00000021374 N 0.000
TCF24 Homo sapiens ENSG00000261787 N 0.000
ENSGACG00000002911 Gasterosteus aculeatus ENSGACG00000002911 N 0.000
TCF24 Gorilla gorilla ENSGGOG00000027653 N 0.000
ENSLACG00000004204 Latimeria chalumnae ENSLACG00000004204 N 0.000
ENSLACG00000014458 Latimeria chalumnae ENSLACG00000014458 N 0.000
TCF23 Loxodonta africana ENSLAFG00000014587 N 0.000
ENSLOCG00000004611 Lepisosteus oculatus ENSLOCG00000004611 N 0.000
ENSMEUG00000010665 Macropus eugenii ENSMEUG00000010665 N 0.000
TCF23 Monodelphis domestica ENSMODG00000015714 N 0.000
ENSMODG00000024958 Monodelphis domestica ENSMODG00000024958 N 0.000
Tcf23 Mus musculus ENSMUSG00000006642 N 0.000
Tcf24 Mus musculus ENSMUSG00000099032 N 0.000
ENSNLEG00000010898 Nomascus leucogenys ENSNLEG00000010898 N 0.000
TCF24 Ornithorhynchus anatinus ENSOANG00000002317 N 0.000
TCF23 Ornithorhynchus anatinus ENSOANG00000003936 N 0.000
ENSOARG00000000076 Ovis aries ENSOARG00000000076 N 0.000
ENSOARG00000019168 Ovis aries ENSOARG00000019168 N 0.000
ENSOCUG00000008655 Oryctolagus cuniculus ENSOCUG00000008655 N 0.000
ENSOPRG00000010556 Ochotona princeps ENSOPRG00000010556 N 0.000
ENSP00000296096-D1 Bos grunniens ENSP00000296096-D1 N 0.000
ENSPANG00000017721 Papio anubis ENSPANG00000017721 N 0.000
ENSPFOG00000004192 Poecilia formosa ENSPFOG00000004192 N 0.000
ENSPSIG00000014305 Pelodiscus sinensis ENSPSIG00000014305 N 0.000
ENSPVAG00000015152 Pteropus vampyrus ENSPVAG00000015152 N 0.000
Tcf23 Rattus norvegicus ENSRNOG00000025736 N 0.000
Tcf24 Rattus norvegicus ENSRNOG00000052668 N 0.000
ENSSHAG00000012462 Sarcophilus harrisii ENSSHAG00000012462 N 0.000
TCF23 Sus scrofa ENSSSCG00000027409 N 0.000
ENSSTOG00000007256 Ictidomys tridecemlineatus ENSSTOG00000007256 N 0.000
ENSSTOG00000015523 Ictidomys tridecemlineatus ENSSTOG00000015523 N 0.000
TCF24 Takifugu rubripes ENSTRUG00000009376 N 0.000
TCF23 Tursiops truncatus ENSTTRG00000005255 N 0.000
e_gw.78.156.1 Branchiostoma floridae e_gw.78.156.1 N 0.000
e_gw.78.157.1 Branchiostoma floridae e_gw.78.157.1 N 0.000
Gfo_R001999 Geospiza fortis Gfo_R001999 N 0.000
gw.78.158.1 Branchiostoma floridae gw.78.158.1 N 0.000
LotgiG70568 Lottia gigantea LotgiG70568 N 0.000
Ogr10845 Ophisaurus gracilis Ogr10845 N 0.000
Pvit_15007 Pogona vitticeps Pvit_15007 N 0.000
SPU_016445 Strongylocentrotus purpuratus SPU_016445 N 0.000