Alligator_sinensis_CCG005176.1 (Alligator sinensis)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Alligator_sinensis_CCG005176.1 T069843_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nfil3
M01819_2.00
Mus musculus
NRTTAYVNNN

NNNBRTAAYN
PBM
Weirauch et al.(2014)
pTH5082
0.829 0.980
NFIL3
M02848_2.00
Homo sapiens
NVTTACRTAAYN

NRTTAYGTAABN
SELEX
Jolma et al.(2013)
NFIL3_1
0.829 0.980
NFIL3
M02658_2.00
Homo sapiens
TTAYGTAABNN

NNVTTACRTAA
SELEX
Mathelier et al.(2014)
MA0025.1
0.829 0.980
NFIL3
M04034_2.00
Homo sapiens
RTKAYGTAAY

RTTACRTMAY
SELEX
Rodriguez-Martinez et al.(2017)
NFIL3.1
0.829 0.980
Nfil3
M08842_2.00
Mus musculus
DRTKATGYAAB

VTTRCATMAYH
Misc
Kulakovskiy et al.(2013)
NFIL3_MOUSE.H11MO.0.C
0.829 0.980
NFIL3
M09982_2.00
Homo sapiens
NRTTAYGTAABN

NVTTACRTAAYN
Transfac
Matys et al.(2006)
V$E4BP4_01
0.829 0.980
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG005176.1 bZIP 75 125

Links

Other bZIP family TFs
Other Alligator sinensis TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29635.m000461 Ricinus communis 29635.m000461 I 0.000
29813.m001543 Ricinus communis 29813.m001543 I 0.000
30068.m002623 Ricinus communis 30068.m002623 I 0.000
30174.m008961 Ricinus communis 30174.m008961 I 0.000
30174.m009031 Ricinus communis 30174.m009031 I 0.000
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.000
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.000
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.000
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.000
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.000
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.000
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.000
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.000
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.000
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.000
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.000
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.000
cassava47343.m1 Manihot esculenta cassava47343.m1 N 0.000
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.000
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.000
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.000
Ca_00417 Cicer arietinum Ca_00417 I 0.000
Ca_06590 Cicer arietinum Ca_06590 N 0.000
Ca_10494 Cicer arietinum Ca_10494 I 0.000
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.000
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.000
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.000
Ciclev10024614m.g Citrus clementina Ciclev10024614m.g N 0.000
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.000
Cla010474 Citrullus lanatus Cla010474 I 0.000
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.000
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.000
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.000
Eucgr.J01042 Eucalyptus grandis Eucgr.J01042 N 0.000
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.000
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.000
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.000
F775_02727 Aegilops tauschii F775_02727 I 0.000
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.000
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.000
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.000
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.000
GLYMA13G29920 Glycine max GLYMA13G29920 N 0.000
GLYMA15G09190 Glycine max GLYMA15G09190 N 0.000
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.000
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.000
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.000
GLYMA20G03890 Glycine max GLYMA20G03890 N 0.000
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.000
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.000
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.000
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.000
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.000
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.000
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.000
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.000
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.000
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.000
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.000
LjT06B04.30.nd Lotus japonicus LjT06B04.30.nd N 0.000
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.000
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.000
Lus10008291.g Linum usitatissimum Lus10008291.g N 0.000
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.000
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.000
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.000
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.000
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.000
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.000
MDP0000127123 Malus domestica MDP0000127123 N 0.000
MDP0000133476 Malus domestica MDP0000133476 I 0.000
MDP0000138669 Malus domestica MDP0000138669 I 0.000
MDP0000157628 Malus domestica MDP0000157628 I 0.000
MDP0000197375 Malus domestica MDP0000197375 I 0.000
MDP0000276536 Malus domestica MDP0000276536 I 0.000
MDP0000316843 Malus domestica MDP0000316843 N 0.000
MDP0000551969 Malus domestica MDP0000551969 I 0.000
mgf018851m Mimulus guttatus mgf018851m I 0.000
mgf024137m Mimulus guttatus mgf024137m N 0.000
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.000
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.000
MTR_2g016730 Medicago truncatula MTR_2g016730 N 0.000
MTR_4g111915 Medicago truncatula MTR_4g111915 N 0.000
MTR_4g112490 Medicago truncatula MTR_4g112490 N 0.000
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.000
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.000
OBART12G17080 Oryza barthii OBART12G17080 I 0.000
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.000
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.000
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.000
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.000
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.000
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.000
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.000
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.000
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.000
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.000
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.000
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.000
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.000
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.000
OS12G0582900 Oryza sativa OS12G0582900 I 0.000
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.000
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.000
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.000
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.000
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.000
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.000
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.000
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N 0.000
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.000
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.000
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.000
PK13330.1 Cannabis sativa PK13330.1 I 0.000
PK25269.1 Cannabis sativa PK25269.1 I 0.000
PK28640.1 Cannabis sativa PK28640.1 I 0.000
Pm008788 Prunus mume Pm008788 I 0.000
Pm015931 Prunus mume Pm015931 I 0.000
Pm030235 Prunus mume Pm030235 I 0.000
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.000
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.000
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.000
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.000
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.000
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.000
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.000
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.000
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.000
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.000
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.000
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.000
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.000
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.000
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.000
Si024417m.g Setaria italica Si024417m.g I 0.000
Si032213m.g Setaria italica Si032213m.g I 0.000
Si038848m.g Setaria italica Si038848m.g I 0.000
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.000
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.000
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N 0.000
TCM_005425 Theobroma cacao TCM_005425 I 0.000
TCM_011632 Theobroma cacao TCM_011632 I 0.000
TCM_014471 Theobroma cacao TCM_014471 I 0.000
TCM_015579 Theobroma cacao TCM_015579 I 0.000
TCM_018659 Theobroma cacao TCM_018659 I 0.000
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.000
VIT_02s0025g03170 Vitis vinifera VIT_02s0025g03170 N 0.000
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.000
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.000