Cagra.13847s0002 (Capsella grandiflora)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Cagra.13847s0002 T071488_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VIP1
M06753_2.00 		Arabidopsis thaliana
DTGMCAGCTGKNHH
DDNMCAGCTGKCAH		 Dap-seq
OMalley et al.(2016)
VIP1_colamp_a 		0.608 1.000
VIP1
M06754_2.00 		Arabidopsis thaliana
DTGMCAGCTGDN
NHCAGCTGKCAH		 Dap-seq
OMalley et al.(2016)
VIP1_col_v3a 		0.608 1.000
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.13847s0002.1.p bZIP 193 254
Cagra.13847s0002.1.p bZIP 236 273

Links

Other bZIP family TFs
Other Capsella grandiflora TFs

Invalid Input OrderBy

3 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action