CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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VDBG_09365
(
Verticillium albo atrum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
VDBG_09365
T078408_2.00
Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FGRRES_01877
M01175_2.00
Fusarium graminearum
NNNRGCTGNN
NNCAGCYNNN
PBM
Lambert et al.(2019)
pTH10260
0.825
0.976
NCU03699
M01878_2.00
Neurospora crassa
NNVRGCTGDN
NHCAGCYBNN
PBM
Weirauch et al.(2014)
pTH8956
0.824
0.976
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VDBG_09365T0
C2H2 ZF
248
269
QRCPHPDCGKTFKDLKAHMLTH
VDBG_09365T0
C2H2 ZF
276
302
KCPIQTCDYHVKGFARKYDKNRHTLTH
VDBG_09365T0
C2H2 ZF
307
337
MVCGFCPGSGTPAEKSFNRADVFKRHLTAVH
VDBG_09365T0
C2H2 ZF
369
388
KCSTCSQTFSNAQDFYEHLD
Links
Other
C2H2 ZF
family TFs
Other
Verticillium albo atrum
TFs
89 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy