AMTR_s00002p00270520 (Amborella trichopoda)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 AMTR_s00002p00270520 T080664_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.827 0.977
IDD7
M06803_2.00
Arabidopsis thaliana
NDDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHHN
Dap-seq
OMalley et al.(2016)
IDD7_col_a
0.797 0.953
IDD4
M06809_2.00
Arabidopsis thaliana
WWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWW
Dap-seq
OMalley et al.(2016)
IDD4_col_a
0.797 0.907
MGP
M06795_2.00
Arabidopsis thaliana
HNHDWTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAWHDND
Dap-seq
OMalley et al.(2016)
MGP_col_a
0.797 0.907
MGP
M06796_2.00
Arabidopsis thaliana
NNDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHNN
Dap-seq
OMalley et al.(2016)
MGP_colamp_a
0.797 0.907
IDD5
M06807_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTTSYD

HRSAAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
IDD5_colamp_a
0.792 0.930
IDD5
M06808_2.00
Arabidopsis thaliana
WTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAW
Dap-seq
OMalley et al.(2016)
IDD5_col
0.792 0.930
AT1G14580
M06797_2.00
Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWWNNN
Dap-seq
OMalley et al.(2016)
At1g14580_col_a
0.792 0.884
AT1G14580
M06798_2.00
Arabidopsis thaliana
NNTTTTGTCKTTTWSYD

HRSWAAAMGACAAAANN
Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a
0.792 0.884
NUC
M06822_2.00
Arabidopsis thaliana
NNNNNTTTTGTCKTYTWBYD

HRVWARAMGACAAAANNNNN
Dap-seq
OMalley et al.(2016)
NUC_col_a
0.774 0.884
NUC
M06823_2.00
Arabidopsis thaliana
NDTTTTGTCGTYTWNYD

HRNWARACGACAAAAHN
Dap-seq
OMalley et al.(2016)
NUC_colamp_a
0.774 0.884
IDD1
M06824_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTWBYD

HRVWAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a
0.764 0.930
IDD1
M06825_2.00
Arabidopsis thaliana
WDTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAHW
Dap-seq
OMalley et al.(2016)
At5g66730_col
0.764 0.930
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN01511 C2H2 ZF 153 174
ERN01511 C2H2 ZF 173 199

Links

Other C2H2 ZF family TFs
Other Amborella trichopoda TFs

641 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL008953 Aedes aegypti AAEL008953 N 0.000
AALB006729 Anopheles albimanus AALB006729 N 0.000
AATE017375 Anopheles atroparvus AATE017375 N 0.000
ACOM040413 Anopheles coluzzii ACOM040413 N 0.000
ACUA025938 Anopheles culicifacies ACUA025938 N 0.000
ADAC003940 Anopheles darlingi ADAC003940 N 0.000
ADIR014488 Anopheles dirus ADIR014488 N 0.000
AFAF001710 Anopheles farauti AFAF001710 N 0.000
AGAP001093 Anopheles gambiae AGAP001093 N 0.000
AMAM009743 Anopheles maculatus AMAM009743 N 0.000
AMEM009036 Anopheles merus AMEM009036 N 0.000
AMIN005768 Anopheles minimus AMIN005768 N 0.000
AQUA002561 Anopheles quadriannulatus AQUA002561 N 0.000
ASIS023616 Anopheles sinensis ASIS023616 N 0.000
ASTEI07779 Anopheles stephensi ASTEI07779 N 0.000
CpipJ_CPIJ003767 Culex pipiens CpipJ_CPIJ003767 N 0.000
CPIJ003767 Culex quinquefasciatus CPIJ003767 N 0.000
ENSPMAG00000008546 Petromyzon marinus ENSPMAG00000008546 I 0.000