Bra024771 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra024771 T081938_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SGR5
M06805_2.00
Arabidopsis thaliana
WTTTTGTCTTWTHYD

HRDAWAAGACAAAAW
Dap-seq
OMalley et al.(2016)
SGR5_col_a
0.812 0.955
SGR5
M06806_2.00
Arabidopsis thaliana
WTTTGTCTYWWHBNN

NNVDWWRAGACAAAW
Dap-seq
OMalley et al.(2016)
SGR5_colamp_a
0.812 0.955
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra024771.1-P C2H2 ZF 138 159
Bra024771.1-P C2H2 ZF 158 185

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
fgenesh1_pg.00168_#_97 Aspergillus carbonarius fgenesh1_pg.00168_#_97 N 0.000
NechaG1729 Fusarium solani NechaG1729 N 0.000
e_gw1.26.11.1 Nectria haematococca e_gw1.26.11.1 N 0.000
gw1.73.1.1 Nectria haematococca gw1.73.1.1 N 0.000