CRE25436 (Caenorhabditis remanei)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 CRE25436 T085069_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
lin-48
M00614_2.00
Caenorhabditis elegans
HCCGTTAB

VTAACGGD
PBM
Narasimhan et al.(2015)
pTH9155
0.827 1.000
ovo
M03669_2.00
Drosophila melanogaster
DNMCCGTTA

TAACGGKNH
SELEX
Nitta et al.(2015)
ovo_1
0.790 0.826
ovo
M06064_2.00
Drosophila melanogaster
CHGTTAHW

WDTAACDG
B1H
Zhu et al.(2011)
ovo_FlyReg_FBgn0003028
0.790 0.826
ovo
M06065_2.00
Drosophila melanogaster
RGTHCCGTTAT

ATAACGGDACY
B1H
Zhu et al.(2011)
ovo_SANGER_5_FBgn0003028
0.790 0.826
ovo
M06066_2.00
Drosophila melanogaster
DDTMCCGTTABNYN

NRNVTAACGGKAHH
B1H
Zhu et al.(2011)
ovo_SOLEXA_5_FBgn0003028
0.790 0.826
ovo
M02671_2.00
Drosophila melanogaster
DCNGTTWSD

HSWAACNGH
SELEX
Mathelier et al.(2014)
MA0126.1
0.790 0.826
ovo
M09662_2.00
Drosophila melanogaster
DCNGTTAMWNNDV

BHNNWKTAACNGH
Misc
Kulakovskiy et al.(2009)
ovo
0.790 0.826
ovo
M10373_2.00
Drosophila melanogaster
NNNDCNGTTWSDDNN

NNHHSWAACNGHNNN
Transfac
Matys et al.(2006)
I$OVO_01
0.790 0.826
ovo
M10374_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$OVO_Q6
0.790 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CRE25436 C2H2 ZF 137 159
CRE25436 C2H2 ZF 165 187
CRE25436 C2H2 ZF 193 216

Links

Other C2H2 ZF family TFs
Other Caenorhabditis remanei TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACAC_0001218201 Angiostrongylus cantonensis ACAC_0001218201 N 0.000
ACOC_0000329601 Angiostrongylus costaricensis ACOC_0000329601 N 0.000
ALUE_0001180601 Ascaris lumbricoides ALUE_0001180601 N 0.000
ANCCAN_15383 Ancylostoma caninum ANCCAN_15383 N 0.000
ANCCEY_04433 Ancylostoma ceylanicum ANCCEY_04433 N 0.000
ASIM_0001160201 Anisakis simplex ASIM_0001160201 N 0.000
Bm4813 Brugia malayi Bm4813 N 0.000
CGOC_0000927301 Cylicostephanus goldi CGOC_0000927301 N 0.000
D917_05194 Trichinella nativa D917_05194 N 0.000
D918_01735 Trichuris suis D918_01735 N 0.000
DME_0000413601 Dracunculus medinensis DME_0000413601 N 0.000
EEL_0000340601 Elaeophora elaphi EEL_0000340601 N 0.000
EVEC_0001249101 Enterobius vermicularis EVEC_0001249101 N 0.000
GPUH_0002215801 Gongylonema pulchrum GPUH_0002215801 N 0.000
Hba_00636 Heterorhabditis bacteriophora Hba_00636 N 0.000
HCOI00202100 Haemonchus contortus HCOI00202100 N 0.000
HPLM_0000008901 Haemonchus placei HPLM_0000008901 N 0.000
HPLM_0001566201 Haemonchus placei HPLM_0001566201 N 0.000
L596_g21980 Steinernema carpocapsae L596_g21980 N 0.000
L889_g15502 Steinernema feltiae L889_g15502 N 0.000
L892_g11079 Steinernema scapterisci L892_g11079 N 0.000
L898_g30040 Steinernema monticolum L898_g30040 N 0.000
LOAG_06215 Loa loa LOAG_06215 N 0.000
maker-nMf.1.1.scaf07513-snap-gene-0.5 Meloidogyne floridensis maker-nMf.1.1.scaf07513-snap-gene-0.5 N 0.000
Minc04978 Meloidogyne incognita Minc04978 N 0.000
nAv.1.0.1.g02191 Acanthocheilonema viteae nAv.1.0.1.g02191 N 0.000
NBR_0002098301 Nippostrongylus brasiliensis NBR_0002098301 N 0.000
nDi.2.2.2.g02408 Dirofilaria immitis nDi.2.2.2.g02408 N 0.000
NECAME_03414 Necator americanus NECAME_03414 N 0.000
nLs.2.1.2.g00583 Litomosoides sigmodontis nLs.2.1.2.g00583 N 0.000
nOo.2.0.1.g01013 Onchocerca ochengi nOo.2.0.1.g01013 N 0.000
nRc.2.0.1.g25601 Romanomermis culicivorax nRc.2.0.1.g25601 N 0.000
OESDEN_04377 Oesophagostomum dentatum OESDEN_04377 N 0.000
OFLC_0001358201 Onchocerca flexuosa OFLC_0001358201 N 0.000
PPA09670 Pristionchus pacificus PPA09670 N 0.000
PTRK_0000540400 Parastrongyloides trichosuri PTRK_0000540400 N 0.000
RSKR_0000949900 Rhabditophanes kr3021 RSKR_0000949900 N 0.000
scaffold1561-EXSNAP2012.3 Pristionchus exspectatus scaffold1561-EXSNAP2012.3 N 0.000
SMUV_0000007601 Syphacia muris SMUV_0000007601 N 0.000
SPAL_0001197000 Strongyloides papillosus SPAL_0001197000 N 0.000
SSTP_0000398400 Strongyloides stercoralis SSTP_0000398400 N 0.000
SVE_0387200 Strongyloides venezuelensis SVE_0387200 N 0.000
SVUK_0000871301 Strongylus vulgaris SVUK_0000871301 N 0.000
TCLT_0000451401 Thelazia callipaeda TCLT_0000451401 N 0.000
TCNE_0001236501 Toxocara canis TCNE_0001236501 N 0.000
TELCIR_05319 Teladorsagia circumcincta TELCIR_05319 N 0.000
WBGene00237735 Onchocerca volvulus WBGene00237735 N 0.000
WUBG_10166 Wuchereria bancrofti WUBG_10166 N 0.000