CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CRE25436
(
Caenorhabditis remanei
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
CRE25436
T085069_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
lin-48
M00614_2.00
Caenorhabditis elegans
HCCGTTAB
VTAACGGD
PBM
Narasimhan et al.(2015)
pTH9155
0.827
1.000
ovo
M03669_2.00
Drosophila melanogaster
DNMCCGTTA
TAACGGKNH
SELEX
Nitta et al.(2015)
ovo_1
0.790
0.826
ovo
M06064_2.00
Drosophila melanogaster
CHGTTAHW
WDTAACDG
B1H
Zhu et al.(2011)
ovo_FlyReg_FBgn0003028
0.790
0.826
ovo
M06065_2.00
Drosophila melanogaster
RGTHCCGTTAT
ATAACGGDACY
B1H
Zhu et al.(2011)
ovo_SANGER_5_FBgn0003028
0.790
0.826
ovo
M06066_2.00
Drosophila melanogaster
DDTMCCGTTABNYN
NRNVTAACGGKAHH
B1H
Zhu et al.(2011)
ovo_SOLEXA_5_FBgn0003028
0.790
0.826
ovo
M02671_2.00
Drosophila melanogaster
DCNGTTWSD
HSWAACNGH
SELEX
Mathelier et al.(2014)
MA0126.1
0.790
0.826
ovo
M09662_2.00
Drosophila melanogaster
DCNGTTAMWNNDV
BHNNWKTAACNGH
Misc
Kulakovskiy et al.(2009)
ovo
0.790
0.826
ovo
M10373_2.00
Drosophila melanogaster
NNNDCNGTTWSDDNN
NNHHSWAACNGHNNN
Transfac
Matys et al.(2006)
I$OVO_01
0.790
0.826
ovo
M10374_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$OVO_Q6
0.790
0.826
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CRE25436
C2H2 ZF
137
159
LTCHICGKKFGLQRLLNRHIKCH
CRE25436
C2H2 ZF
165
187
YLCTFCGKGFNDTFDLKRHTRTH
CRE25436
C2H2 ZF
193
216
YKCEQCEKSFTQRCSLESHLRKVH
Links
Other
C2H2 ZF
family TFs
Other
Caenorhabditis remanei
TFs
70 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACAC_0001218201
Angiostrongylus cantonensis
ACAC_0001218201
N
0.000
ACOC_0000329601
Angiostrongylus costaricensis
ACOC_0000329601
N
0.000
ALUE_0001180601
Ascaris lumbricoides
ALUE_0001180601
N
0.000
ANCCAN_15383
Ancylostoma caninum
ANCCAN_15383
N
0.000
ANCCEY_04433
Ancylostoma ceylanicum
ANCCEY_04433
N
0.000
ASIM_0001160201
Anisakis simplex
ASIM_0001160201
N
0.000
Bm4813
Brugia malayi
Bm4813
N
0.000
CGOC_0000927301
Cylicostephanus goldi
CGOC_0000927301
N
0.000
D917_05194
Trichinella nativa
D917_05194
N
0.000
D918_01735
Trichuris suis
D918_01735
N
0.000
DME_0000413601
Dracunculus medinensis
DME_0000413601
N
0.000
EEL_0000340601
Elaeophora elaphi
EEL_0000340601
N
0.000
EVEC_0001249101
Enterobius vermicularis
EVEC_0001249101
N
0.000
GPUH_0002215801
Gongylonema pulchrum
GPUH_0002215801
N
0.000
Hba_00636
Heterorhabditis bacteriophora
Hba_00636
N
0.000
HCOI00202100
Haemonchus contortus
HCOI00202100
N
0.000
HPLM_0000008901
Haemonchus placei
HPLM_0000008901
N
0.000
HPLM_0001566201
Haemonchus placei
HPLM_0001566201
N
0.000
L596_g21980
Steinernema carpocapsae
L596_g21980
N
0.000
L889_g15502
Steinernema feltiae
L889_g15502
N
0.000
L892_g11079
Steinernema scapterisci
L892_g11079
N
0.000
L898_g30040
Steinernema monticolum
L898_g30040
N
0.000
LOAG_06215
Loa loa
LOAG_06215
N
0.000
maker-nMf.1.1.scaf07513-snap-gene-0.5
Meloidogyne floridensis
maker-nMf.1.1.scaf07513-snap-gene-0.5
N
0.000
Minc04978
Meloidogyne incognita
Minc04978
N
0.000
nAv.1.0.1.g02191
Acanthocheilonema viteae
nAv.1.0.1.g02191
N
0.000
NBR_0002098301
Nippostrongylus brasiliensis
NBR_0002098301
N
0.000
nDi.2.2.2.g02408
Dirofilaria immitis
nDi.2.2.2.g02408
N
0.000
NECAME_03414
Necator americanus
NECAME_03414
N
0.000
nLs.2.1.2.g00583
Litomosoides sigmodontis
nLs.2.1.2.g00583
N
0.000
nOo.2.0.1.g01013
Onchocerca ochengi
nOo.2.0.1.g01013
N
0.000
nRc.2.0.1.g25601
Romanomermis culicivorax
nRc.2.0.1.g25601
N
0.000
OESDEN_04377
Oesophagostomum dentatum
OESDEN_04377
N
0.000
OFLC_0001358201
Onchocerca flexuosa
OFLC_0001358201
N
0.000
PPA09670
Pristionchus pacificus
PPA09670
N
0.000
PTRK_0000540400
Parastrongyloides trichosuri
PTRK_0000540400
N
0.000
RSKR_0000949900
Rhabditophanes kr3021
RSKR_0000949900
N
0.000
scaffold1561-EXSNAP2012.3
Pristionchus exspectatus
scaffold1561-EXSNAP2012.3
N
0.000
SMUV_0000007601
Syphacia muris
SMUV_0000007601
N
0.000
SPAL_0001197000
Strongyloides papillosus
SPAL_0001197000
N
0.000
SSTP_0000398400
Strongyloides stercoralis
SSTP_0000398400
N
0.000
SVE_0387200
Strongyloides venezuelensis
SVE_0387200
N
0.000
SVUK_0000871301
Strongylus vulgaris
SVUK_0000871301
N
0.000
TCLT_0000451401
Thelazia callipaeda
TCLT_0000451401
N
0.000
TCNE_0001236501
Toxocara canis
TCNE_0001236501
N
0.000
TELCIR_05319
Teladorsagia circumcincta
TELCIR_05319
N
0.000
WBGene00237735
Onchocerca volvulus
WBGene00237735
N
0.000
WUBG_10166
Wuchereria bancrofti
WUBG_10166
N
0.000