ENSAMEG00000004878 (Ailuropoda melanoleuca)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSAMEG00000004878 T086692_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gli1
M01023_2.00
Mus musculus
NGACCACCHN

NDGGTGGTCN
PBM
Peterson et al.(2012)
Gli1
0.827 1.000
GLI1
M02643_2.00
Homo sapiens
GACCACCCAMG

CKTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI1
0.827 1.000
Gli1
M08976_2.00
Mus musculus
RGRCCACCCASV

BSTGGGTGGYCY
Misc
Kulakovskiy et al.(2013)
GLI1_MOUSE.H11MO.0.C
0.827 1.000
GLI1
M10176_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI1_Q2
0.827 1.000
GLI1
M10177_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI1_Q3_01
0.827 1.000
GLI1
M10178_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI1_Q3
0.827 1.000
GLI1
M10179_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI_Q6
0.827 1.000
GLI3
M04416_2.00
Homo sapiens
VGACCACCCACVNHG

CDNBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX
0.796 0.886
GLI3
M02642_2.00
Homo sapiens
GACCACCCANK

MNTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI3
0.796 0.886
GLI3
M08875_2.00
Homo sapiens
VRACCACCCAV

BTGGGTGGTYB
Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B
0.796 0.886
GLI3
M10167_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_01
0.796 0.886
GLI3
M10168_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_Q5_01
0.796 0.886
GLI3
M04417_2.00
Homo sapiens
CWHBGTGGGTGGTCY

RGACCACCCACVDWG
SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX
0.796 0.886
Gli2
M01024_2.00
Mus musculus
NGACCACCYN

NRGGTGGTCN
PBM
Peterson et al.(2012)
Gli2
0.779 0.851
GLI2
M02875_2.00
Homo sapiens
GMCCACMCANVNHB

VDNBNTGKGTGGKC
SELEX
Jolma et al.(2013)
GLI2_1
0.779 0.851
GLI2
M02876_2.00
Homo sapiens
GCGACCACVCWR

YWGBGTGGTCGC
SELEX
Jolma et al.(2013)
GLI2_2
0.779 0.851
GLI2
M02732_2.00
Homo sapiens
GACCACMCAN

NTGKGTGGTC
SELEX
Jolma et al.(2010)
GLI2_monomer
0.779 0.851
GLI2
M04402_2.00
Homo sapiens
VGACCACCCACVDHG

CDHBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX
0.779 0.851
GLI2
M02641_2.00
Homo sapiens
GACCACCCAHG

CDTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI2
0.779 0.851
GLI2
M10114_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q3
0.779 0.851
GLI2
M10115_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q6
0.779 0.851
GLI2
M04403_2.00
Homo sapiens
RGACCACCCACVWWG

CWWBGTGGGTGGTCY
SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX
0.779 0.851
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAMEP00000005155 C2H2 ZF 235 259
ENSAMEP00000005155 C2H2 ZF 267 294
ENSAMEP00000005155 C2H2 ZF 300 324
ENSAMEP00000005155 C2H2 ZF 330 355
ENSAMEP00000005155 C2H2 ZF 361 386

Links

Other C2H2 ZF family TFs
Other Ailuropoda melanoleuca TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ALNC14_027910 Albugo laibachii ALNC14_027910 N 0.000
ALNC14_034240 Albugo laibachii ALNC14_034240 N 0.000
F443_02274 Phytophthora parasitica F443_02274 N 0.000
F443_03903 Phytophthora parasitica F443_03903 N 0.000
F443_04862 Phytophthora parasitica F443_04862 N 0.000
fgenesh1_kg.C_scaffold_16000608 Phytophthora capsici fgenesh1_kg.C_scaffold_16000608 N 0.000
fgenesh_scip_prom.28083.569 Phytophthora lateralis fgenesh_scip_prom.28083.569 N 0.000
fgenesh_scip_prom.28083.6196 Phytophthora lateralis fgenesh_scip_prom.28083.6196 N 0.000
fgenesh_scip_prom.46568.1731 Phytophthora kernoviae fgenesh_scip_prom.46568.1731 N 0.000
fgenesh_scip_prom.46568.1733 Phytophthora kernoviae fgenesh_scip_prom.46568.1733 N 0.000
HpaG809256 Hyaloperonospora arabidopsidis HpaG809256 N 0.000
HpaG813524 Hyaloperonospora arabidopsidis HpaG813524 N 0.000
HpaG813610 Hyaloperonospora arabidopsidis HpaG813610 N 0.000
maker-pag1_scaffold_576-fgenesh-gene-0.2 Pythium aphanidermatum maker-pag1_scaffold_576-fgenesh-gene-0.2 N 0.000
maker-pag1_scaffold_576-fgenesh-gene-0.4 Pythium aphanidermatum maker-pag1_scaffold_576-fgenesh-gene-0.4 N 0.000
maker-par_contig_1523-snap-gene-0.2 Pythium arrhenomanes maker-par_contig_1523-snap-gene-0.2 N 0.000
maker-par_contig_3769-fgenesh-gene-0.0 Pythium arrhenomanes maker-par_contig_3769-fgenesh-gene-0.0 N 0.000
maker-pve_contig_241-fgenesh-gene-0.4 Pythium vexans maker-pve_contig_241-fgenesh-gene-0.4 N 0.000
Phyra74602 Phytophthora ramorum Phyra74602 N 0.000
Phyra78530 Phytophthora ramorum Phyra78530 N 0.000
Physo128027 Phytophthora sojae Physo128027 N 0.000
Physo128029 Phytophthora sojae Physo128029 N 0.000
Physo138869 Phytophthora sojae Physo138869 N 0.000
PITG_12584 Phytophthora infestans PITG_12584 N 0.000
PITG_12760 Phytophthora infestans PITG_12760 N 0.000
PYU1_G011634 Pythium ultimum PYU1_G011634 N 0.000
PYU1_G011639 Pythium ultimum PYU1_G011639 N 0.000
SPRG_06148 Saprolegnia parasitica SPRG_06148 N 0.000