prdm4 (Danio rerio)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSDARG00000017366 T090847_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of gene expression. Predicted to act upstream of or within transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in presumptive neural retina; retina; and somite. Orthologous to human PRDM4 (PR/SET domain 4). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000099506 C2H2 ZF 605 627
ENSDARP00000099506 C2H2 ZF 633 655
ENSDARP00000099506 C2H2 ZF 661 683
ENSDARP00000099506 C2H2 ZF 689 711
ENSDARP00000099506 C2H2 ZF 717 739
ENSDARP00000099506 C2H2 ZF 745 766
ENSDARP00000118918 C2H2 ZF 563 585
ENSDARP00000118918 C2H2 ZF 591 613
ENSDARP00000118918 C2H2 ZF 619 641
ENSDARP00000118918 C2H2 ZF 647 669
ENSDARP00000118918 C2H2 ZF 675 697
ENSDARP00000118918 C2H2 ZF 703 724

Links

Other C2H2 ZF family TFs
Other Danio rerio TFs

2 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMXG00000007659 Astyanax mexicanus ENSAMXG00000007659 N 0.775