sall1b (Danio rerio)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSDARG00000075891 T091062_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Townes-Brocks syndrome and middle lobe syndrome. Orthologous to human SALL1 (spalt like transcription factor 1). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000124330 C2H2 ZF 410 432
ENSDARP00000124330 C2H2 ZF 438 460
ENSDARP00000124330 C2H2 ZF 651 672
ENSDARP00000124330 C2H2 ZF 678 700
ENSDARP00000124330 C2H2 ZF 711 732
ENSDARP00000124330 C2H2 ZF 910 931
ENSDARP00000124330 C2H2 ZF 937 959
ENSDARP00000124330 C2H2 ZF 1036 1058
ENSDARP00000124330 C2H2 ZF 1064 1086

Links

Other C2H2 ZF family TFs
Other Danio rerio TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSXMAG00000016273 Xiphophorus maculatus ENSXMAG00000016273 N 0.786
ENSPFOG00000015799 Poecilia formosa ENSPFOG00000015799 N 0.786
ENSLOCG00000007283 Lepisosteus oculatus ENSLOCG00000007283 N 0.786
sall1a Gasterosteus aculeatus ENSGACG00000016702 N 0.784
sall1a Oryzias latipes ENSORLG00000013827 N 0.784
ENSONIG00000002831 Oreochromis niloticus ENSONIG00000002831 N 0.779
sall1a Takifugu rubripes ENSTRUG00000008950 N 0.776
sall1a Tetraodon nigroviridis ENSTNIG00000004257 N 0.776
sall1.L Xenopus laevis XB-GENE-866060 N 0.772
Sall1 Rattus norvegicus ENSRNOG00000013907 N 0.772
SALL1 Otolemur garnettii ENSOGAG00000027316 N 0.772
sall1 Xenopus tropicalis XB-GENE-491393 N 0.771
SALL1 Ornithorhynchus anatinus ENSOANG00000013399 N 0.767