CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
ZNF250
(
Homo sapiens
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSG00000196150
T095285_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables identical protein binding activity and sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF250
M04619_2.00
Homo sapiens
NYASGCCYAY
RTRGGCSTRN
SELEX
Yin et al.(2017)
ZNF250_eDBD_HT-SELEX
(Direct)
(Direct)
ZNF250
M04620_2.00
Homo sapiens
NTAGGCCTAN
NTAGGCCTAN
SELEX
Yin et al.(2017)
ZNF250_eDBD_Methyl-HT-SELEX
(Direct)
(Direct)
ZNF250
M08264_2.00
Homo sapiens
YVDTGCAHTTTTBNB
VNVAAAADTGCAHBR
ChIP-seq
Najafabadi et al.(2015b)
ZNF250
(Direct)
(Direct)
ZNF250
M08370_2.00
Homo sapiens
CYYTGCAGB
VCTGCARRG
ChIP-seq
Schmitges et al.(2016)
P15622_1-3.RCADE
(Direct)
(Direct)
ZNF250
M08944_2.00
Homo sapiens
TACCATRCTGTTTTGRTTAC
GTAAYCAAAACAGYATGGTA
Misc
Kulakovskiy et al.(2013)
ZN250_HUMAN.H11MO.0.C
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000292579
C2H2 ZF
199
221
YMCVECGKCFGRSSHLLQHQRIH
ENSP00000292579
C2H2 ZF
227
249
YVCSVCGKAFSQSSVLSKHRRIH
ENSP00000292579
C2H2 ZF
255
277
YECNECGKAFRVSSDLAQHHKIH
ENSP00000292579
C2H2 ZF
283
305
HECLECRKAFTQLSHLIQHQRIH
ENSP00000292579
C2H2 ZF
311
333
YVCPLCGKAFNHSTVLRSHQRVH
ENSP00000292579
C2H2 ZF
339
361
HRCNECGKTFSVKRTLLQHQRIH
ENSP00000292579
C2H2 ZF
367
389
YTCSECGKAFSDRSVLIQHHNVH
ENSP00000292579
C2H2 ZF
395
417
YECSECGKTFSHRSTLMNHERIH
ENSP00000292579
C2H2 ZF
423
445
YACYECGKAFVQHSHLIQHQRVH
ENSP00000292579
C2H2 ZF
451
473
YVCGECGHAFSARRSLIQHERIH
ENSP00000292579
C2H2 ZF
479
501
FQCTECGKAFSLKATLIVHLRTH
ENSP00000292579
C2H2 ZF
507
529
YECNSCGKAFSQYSVLIQHQRIH
ENSP00000292579
C2H2 ZF
535
557
YECGECGRAFNQHGHLIQHQKVH
ENSP00000393442
C2H2 ZF
194
216
YMCVECGKCFGRSSHLLQHQRIH
ENSP00000393442
C2H2 ZF
222
244
YVCSVCGKAFSQSSVLSKHRRIH
ENSP00000393442
C2H2 ZF
250
272
YECNECGKAFRVSSDLAQHHKIH
ENSP00000393442
C2H2 ZF
278
300
HECLECRKAFTQLSHLIQHQRIH
ENSP00000393442
C2H2 ZF
306
328
YVCPLCGKAFNHSTVLRSHQRVH
ENSP00000393442
C2H2 ZF
334
356
HRCNECGKTFSVKRTLLQHQRIH
ENSP00000393442
C2H2 ZF
362
384
YTCSECGKAFSDRSVLIQHHNVH
ENSP00000393442
C2H2 ZF
390
412
YECSECGKTFSHRSTLMNHERIH
ENSP00000393442
C2H2 ZF
418
440
YACYECGKAFVQHSHLIQHQRVH
ENSP00000393442
C2H2 ZF
446
468
YVCGECGHAFSARRSLIQHERIH
ENSP00000393442
C2H2 ZF
474
496
FQCTECGKAFSLKATLIVHLRTH
ENSP00000393442
C2H2 ZF
502
524
YECNSCGKAFSQYSVLIQHQRIH
ENSP00000393442
C2H2 ZF
530
552
YECGECGRAFNQHGHLIQHQKVH
Links
Other
C2H2 ZF
family TFs
Other
Homo sapiens
TFs
32 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy