CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SCRT1
(
Gorilla gorilla
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSGGOG00000013612
T096424_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SCRT1
M02929_2.00
Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY
SELEX
Jolma et al.(2013)
SCRT1_1
0.827
1.000
SCRT1
M04655_2.00
Homo sapiens
NKCAACAGGTD
HACCTGTTGMN
SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX
0.827
1.000
SCRT1
M08397_2.00
Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY
ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE
0.827
1.000
SCRT1
M04656_2.00
Homo sapiens
NGCRACAGGTD
HACCTGTYGCN
SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX
0.827
1.000
SCRT2
M02925_2.00
Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY
SELEX
Jolma et al.(2013)
SCRT2_1
0.786
0.885
SCRT2
M04643_2.00
Homo sapiens
NGCAACAGGTD
HACCTGTTGCN
SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX
0.786
0.885
SCRT2
M04644_2.00
Homo sapiens
NGCRACAGGTG
CACCTGTYGCN
SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX
0.786
0.885
scrt
M03673_2.00
Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY
SELEX
Nitta et al.(2015)
scrt_1
0.785
0.858
scrt
M06085_2.00
Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK
B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880
0.785
0.858
scrt
M06086_2.00
Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH
B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880
0.785
0.858
scrt
M06087_2.00
Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB
B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880
0.785
0.858
CG12605
M03691_2.00
Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY
SELEX
Nitta et al.(2015)
CG12605_1
0.767
0.814
CG12605
M06139_2.00
Drosophila melanogaster
CACCTGTKG
CMACAGGTG
B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481
0.767
0.814
CG12605
M06140_2.00
Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK
B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481
0.767
0.814
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000013277
C2H2 ZF
87
109
HACGECGKTYATSSNLSRHKQTH
ENSGGOP00000013277
C2H2 ZF
119
140
RCPTCGKVYVSMPAMAMHLLTH
ENSGGOP00000013277
C2H2 ZF
144
166
HKCGVCGKAFSRPWLLQGHMRSH
ENSGGOP00000013277
C2H2 ZF
172
194
FGCAHCGKAFADRSNLRAHMQTH
ENSGGOP00000013277
C2H2 ZF
200
221
FQCKRCKKSFALKSYLNKHYES
ENSGGOP00000019293
C2H2 ZF
89
111
HACGECGKTYATSSNLSRHKQTH
ENSGGOP00000019293
C2H2 ZF
121
142
RCPTCGKVYVSMPAMAMHLLTH
ENSGGOP00000019293
C2H2 ZF
146
168
HKCGVCGKAFSRPWLLQGHMRSH
ENSGGOP00000019293
C2H2 ZF
174
196
FGCAHCGKAFADRSNLRAHMQTH
ENSGGOP00000019293
C2H2 ZF
202
223
FQCKRCKKSFALKSYLNKHYES
Links
Other
C2H2 ZF
family TFs
Other
Gorilla gorilla
TFs
196 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy