Zfp410 (Mus musculus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMUSG00000042472 T101174_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Zfp410
M00140_2.00
Mus musculus
CYATCCCA

TGGGATRG
PBM
Badis et al.(2009)
Zfp410_3034
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZNF410
M02882_2.00
Homo sapiens
KVNTATTATGGGATGKN

NMCATCCCATAATANBM
SELEX
Jolma et al.(2013)
ZNF410_1
0.827 1.000
ZNF410
M04435_2.00
Homo sapiens
NTATTATGGGNTRB

VYANCCCATAATAN
SELEX
Yin et al.(2017)
ZNF410_eDBD_HT-SELEX
0.827 1.000
ZNF410
M04436_2.00
Homo sapiens
NTATTATGGGHTRB

VYADCCCATAATAN
SELEX
Yin et al.(2017)
ZNF410_eDBD_Methyl-HT-SELEX
0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00140_2.00 C2H2 ZF 16 40
M00140_2.00 C2H2 ZF 46 70
M00140_2.00 C2H2 ZF 76 100
M00140_2.00 C2H2 ZF 106 130
M00140_2.00 C2H2 ZF 136 159

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000045550 C2H2 ZF 219 243
ENSMUSP00000045550 C2H2 ZF 249 273
ENSMUSP00000045550 C2H2 ZF 279 303
ENSMUSP00000045550 C2H2 ZF 309 333
ENSMUSP00000045550 C2H2 ZF 339 362

Links

Other C2H2 ZF family TFs
Other Mus musculus TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_017_00010 Aquilegia coerulea Aquca_017_00010 N 0.000
evm.TU.supercontig_26.135 Carica papaya evm.TU.supercontig_26.135 I 0.000
Ca_04337 Cicer arietinum Ca_04337 N 0.000
Cla016588 Citrullus lanatus Cla016588 N 0.000
Cla013854 Citrullus lanatus Cla013854 I 0.000
Ciclev10000612m.g Citrus clementina Ciclev10000612m.g I 0.000
Cucsa.364130 Cucumis sativus Cucsa.364130 N 0.000
Eucgr.F02771 Eucalyptus grandis Eucgr.F02771 N 0.000
gene27539-v1.0-hybrid Fragaria vesca gene27539-v1.0-hybrid N 0.000
GLYMA10G36360 Glycine max GLYMA10G36360 N 0.000
GLYMA20G31210 Glycine max GLYMA20G31210 N 0.000
Gorai.005G076200 Gossypium raimondii Gorai.005G076200 I 0.000
Gorai.009G260000 Gossypium raimondii Gorai.009G260000 I 0.000
Lus10028713.g Linum usitatissimum Lus10028713.g I 0.000
LjSGA_007769.1 Lotus japonicus LjSGA_007769.1 N 0.000
MDP0000852271 Malus domestica MDP0000852271 I 0.000
MDP0000169485 Malus domestica MDP0000169485 I 0.000
MDP0000146969 Malus domestica MDP0000146969 I 0.000
cassava22173.valid.m1 Manihot esculenta cassava22173.valid.m1 I 0.000
cassava19069.valid.m1 Manihot esculenta cassava19069.valid.m1 I 0.000
MTR_1g097300 Medicago truncatula MTR_1g097300 N 0.000
mg018130m Mimulus guttatus mg018130m I 0.000
POPTR_0002s06210 Populus trichocarpa POPTR_0002s06210 I 0.000
POPTR_0005s22180 Populus trichocarpa POPTR_0005s22180 I 0.000
PRUPE_ppa003410mg Prunus persica PRUPE_ppa003410mg N 0.000
SapurV1A.0348s0040 Salix purpurea SapurV1A.0348s0040 I 0.000
SapurV1A.0134s0420 Salix purpurea SapurV1A.0134s0420 I 0.000
Solyc04g072220.2 Solanum lycopersicum Solyc04g072220.2 I 0.000
Solyc12g056790.1 Solanum lycopersicum Solyc12g056790.1 I 0.000
PGSC0003DMG400031149 Solanum tuberosum PGSC0003DMG400031149 I 0.000
TCM_036587 Theobroma cacao TCM_036587 I 0.000
VIT_18s0001g01820 Vitis vinifera VIT_18s0001g01820 I 0.000