CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Zik1
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSRNOG00000055843
T109339_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZIK1
M07633_2.00
Homo sapiens
VNNWYBYNKTGCYWTTGYYHY
RDRRCAAWRGCAMNRVRWNNB
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZIK1.RCADE.ReprocessedData
0.807
0.932
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000075004
C2H2 ZF
212
234
YECSKCGKTFRGKYSLDQHQRVH
ENSRNOP00000075004
C2H2 ZF
240
262
WECRDCGKFFSQTSHLNDHRRIH
ENSRNOP00000075004
C2H2 ZF
268
290
YECNECGKLFRQNSSLVDHQKTH
ENSRNOP00000075004
C2H2 ZF
296
318
YECSQCGKSFSQKATLVKHQRVH
ENSRNOP00000075004
C2H2 ZF
324
346
YKCSECGNSFSQSAILNQHRRIH
ENSRNOP00000075004
C2H2 ZF
352
374
YECRECGKSFSQKATLIKHQRVH
ENSRNOP00000075004
C2H2 ZF
380
402
YKCSECGKSFSQSSILIQHRRIH
ENSRNOP00000075004
C2H2 ZF
408
430
YECNQCGKSFSQKSGLIQHQVVH
ENSRNOP00000075004
C2H2 ZF
436
458
YECDTCGNSFSQCSSLIHHQKCH
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy