CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Zbtb20
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSRNOG00000056716
T109343_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including cellular response to glucose stimulus; positive regulation of glycolytic process; and regulation of gene expression. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm and nuclear body. Predicted to be active in nucleoplasm. Orthologous to human ZBTB20 (zinc finger and BTB domain containing 20). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZBTB20
M04599_2.00
Homo sapiens
NVYATACRTYVN
NBRAYGTATRBN
SELEX
Yin et al.(2017)
ZBTB20_eDBD_HT-SELEX
0.827
1.000
ZBTB20
M04600_2.00
Homo sapiens
NVYATACRTTNN
NNAAYGTATRBN
SELEX
Yin et al.(2017)
ZBTB20_eDBD_Methyl-HT-SELEX
0.827
1.000
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000072458
C2H2 ZF
505
527
YECTLCNKTFTAKQNYVKHMFVH
ENSRNOP00000072458
C2H2 ZF
533
555
HQCSICWRSFSLKDYLIKHMVTH
ENSRNOP00000072458
C2H2 ZF
561
583
YQCSICNKRFTQKSSLNVHMRLH
ENSRNOP00000072458
C2H2 ZF
589
611
YECYICKKKFSHKTLLERHVALH
ENSRNOP00000072458
C2H2 ZF
642
664
YVCSVCPAKFDQIEQFNDHMRMH
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
53 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy