CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSSTOG00000014531
(
Ictidomys tridecemlineatus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSSTOG00000014531
T110779_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF140
M04621_2.00
Homo sapiens
DRCAATTCCGCTCN
NGAGCGGAATTGYH
SELEX
Yin et al.(2017)
ZNF140_eDBD_HT-SELEX
0.784
0.913
ZNF140
M08372_2.00
Homo sapiens
CAATTCYGCYCHNNNNNNNNNNNB
VNNNNNNNNNNNDGRGCRGAATTG
ChIP-seq
Schmitges et al.(2016)
P52738_3-10.RCADE
0.784
0.913
ZNF140
M08945_2.00
Homo sapiens
NNNDNYBYWGCAATTCYRCTCCHN
NDGGAGYRGAATTGCWRVRNHNNN
Misc
Kulakovskiy et al.(2013)
ZN140_HUMAN.H11MO.0.C
0.784
0.913
ZNF140
M04622_2.00
Homo sapiens
NRCAATTCCGCTCV
BGAGCGGAATTGYN
SELEX
Yin et al.(2017)
ZNF140_eDBD_Methyl-HT-SELEX
0.784
0.913
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000013015
C2H2 ZF
161
183
YGCRECGKTFSRRFSLVLHQRTH
ENSSTOP00000013015
C2H2 ZF
189
211
YVCKECGKTFSQISNLVKHQMIH
ENSSTOP00000013015
C2H2 ZF
217
239
HECKDCNKTFSYLSFLVEHQRTH
ENSSTOP00000013015
C2H2 ZF
245
267
YECTECGKAFSRASNLTRHQRIH
ENSSTOP00000013015
C2H2 ZF
273
295
YVCRKCGRAFSSGSELIRHQVTH
ENSSTOP00000013015
C2H2 ZF
301
323
YECTECGKAFRRSSHLTRHHSIH
ENSSTOP00000013015
C2H2 ZF
329
351
FECPECQKAFRCHSFLTKHQRVH
ENSSTOP00000013015
C2H2 ZF
357
379
YECDECGKVFTWHASLTQHTKTH
ENSSTOP00000013015
C2H2 ZF
385
407
YTCAECNKAFSRSFSLILHQVTH
ENSSTOP00000013015
C2H2 ZF
413
435
YVCKVCNKSFSWSSNLAKHQRTH
Links
Other
C2H2 ZF
family TFs
Other
Ictidomys tridecemlineatus
TFs
27 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy