ENSTNIG00000004434 (Tetraodon nigroviridis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTNIG00000004434 T111963_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Snai1
M00781_2.00
Mus musculus
NNNTGTCANN

NNTGACANNN
PBM
Weirauch et al.(2013)
pTH2340
0.767 0.824
SNAI1
M04441_2.00
Homo sapiens
NVCACCTGYN

NRCAGGTGBN
SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX
0.767 0.824
SNAI1
M04443_2.00
Homo sapiens
TRCACCTGYN

NRCAGGTGYA
SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX
0.767 0.824
SNAI1
M08303_2.00
Homo sapiens
NNNNGCACCTGCYNB

VNRGCAGGTGCNNNN
ChIP-seq
Schmitges et al.(2016)
O95863.MEME
0.767 0.824
SNAI1
M08886_2.00
Homo sapiens
VCACCTGB

VCAGGTGB
Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C
0.767 0.824
Snai1
M09002_2.00
Mus musculus
VCACCTGB

VCAGGTGB
Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C
0.767 0.824
SNAI1
M10201_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SNA_Q4
0.767 0.824
SNAI1
M10202_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SNA_Q6
0.767 0.824
SNAI1
M04442_2.00
Homo sapiens
NRCACCTGYN

NRCAGGTGYN
SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX
0.767 0.824
SNAI1
M04444_2.00
Homo sapiens
YRCACCTGYN

NRCAGGTGYR
SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX
0.767 0.824
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000007072 C2H2 ZF 31 53
ENSTNIP00000007072 C2H2 ZF 57 79
ENSTNIP00000007072 C2H2 ZF 85 107
ENSTNIP00000007072 C2H2 ZF 113 134

Links

Other C2H2 ZF family TFs
Other Tetraodon nigroviridis TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Snai1 Mus musculus ENSMUSG00000042821 D 0.767
SNAI1 Homo sapiens ENSG00000124216 D 0.767
ENSOARG00000013174 Ovis aries ENSOARG00000013174 I 0.767
SNAI1 Otolemur garnettii ENSOGAG00000030111 I 0.767
ENSPANG00000007536 Papio anubis ENSPANG00000007536 I 0.767
SNAI1 Procavia capensis ENSPCAG00000011934 I 0.767
SNAI1 Pan troglodytes ENSPTRG00000013614 I 0.767
SNAI1 Pteropus vampyrus ENSPVAG00000004119 I 0.767
Snai1 Rattus norvegicus ENSRNOG00000009594 I 0.767
ENSSTOG00000005866 Ictidomys tridecemlineatus ENSSTOG00000005866 I 0.767
SNAI1 Tupaia belangeri ENSTBEG00000012262 I 0.767
snai3 Takifugu rubripes ENSTRUG00000002385 I 0.808
SNAI1 Tursiops truncatus ENSTTRG00000002029 I 0.767
ENSBTAP00000019345-D1 Bos grunniens ENSBTAP00000019345-D1 I 0.767
Myotis_brandtii_SNAI1_10026057 Myotis brandtii Myotis_brandtii_SNAI1_10026057 I 0.765
Myotis_brandtii_SNAI1_10026379 Myotis brandtii Myotis_brandtii_SNAI1_10026379 I 0.766
ENSNLEG00000006985 Nomascus leucogenys ENSNLEG00000006985 I 0.767
ENSAMEG00000013478 Ailuropoda melanoleuca ENSAMEG00000013478 I 0.767
ENSMPUG00000017558 Mustela putorius furo ENSMPUG00000017558 I 0.767
SNAI1 Bos taurus ENSBTAG00000014554 I 0.767
SNAI1 Canis familiaris ENSCAFG00000011499 I 0.767
SNAI1 Callithrix jacchus ENSCJAG00000000518 I 0.767
SNAI1 Cavia porcellus ENSCPOG00000026663 I 0.767
ENSCSAG00000015065 Chlorocebus sabaeus ENSCSAG00000015065 I 0.767
snai3 Danio rerio ENSDARG00000031243 I 0.792
SNAI1 Dasypus novemcinctus ENSDNOG00000023834 I 0.767
ENSETEG00000016371 Echinops telfairi ENSETEG00000016371 I 0.767
SNAI1 Felis catus ENSFCAG00000010558 I 0.767
SNAI1 Gorilla gorilla ENSGGOG00000024422 I 0.767
SNAI1 Loxodonta africana ENSLAFG00000030265 I 0.767
ENSMICG00000011160 Microcebus murinus ENSMICG00000011160 I 0.767
ENSMLUG00000015053 Myotis lucifugus ENSMLUG00000015053 I 0.767
ENSMMUG00000019719 Macaca mulatta ENSMMUG00000019719 I 0.767
XP_002933720 Xenopus tropicalis XP_002933720 N 0.786