CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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bcl11ab
(
Tetraodon nigroviridis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSTNIG00000012076
T112075_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BCL11A
M07926_2.00
Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV
ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha
0.815
0.939
BCL11A
M08881_2.00
Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV
Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A
0.815
0.939
BCL11A
M10187_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL11A_02
0.815
0.939
BCL11B
M04453_2.00
Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX
0.811
0.921
BCL11B
M04454_2.00
Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX
0.811
0.921
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000001110
C2H2 ZF
212
233
SCEFCGKTFKFQSNLIVHRRSH
ENSTNIP00000001110
C2H2 ZF
239
261
FKCHLCNHACTQASKLKRHMKTH
ENSTNIP00000001110
C2H2 ZF
519
541
DTCEFCGKVFKNCSNLTVHRRSH
ENSTNIP00000001110
C2H2 ZF
547
569
YKCELCSYACAQSSKLTRHMKTH
ENSTNIP00000001110
C2H2 ZF
577
600
YKCEICHMPFSVYSTLEKHMKKWH
ENSTNIP00000015040
C2H2 ZF
455
476
SCEFCGKTFKFQSNLIVHRRSH
ENSTNIP00000015040
C2H2 ZF
482
504
FKCHLCNHACTQASKLKRHMKTH
ENSTNIP00000015040
C2H2 ZF
758
780
DTCEFCGKVFKNCSNLTVHRRSH
ENSTNIP00000015040
C2H2 ZF
786
808
YKCELCSYACAQSSKLTRHMKTH
ENSTNIP00000015040
C2H2 ZF
816
839
YKCEICHMPFSVYSTLEKHMKKWH
Links
Other
C2H2 ZF
family TFs
Other
Tetraodon nigroviridis
TFs
126 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy