GM16048 (Drosophila sechellia)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 FBgn0170964 T116057_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Snai1
M00781_2.00
Mus musculus
NNNTGTCANN

NNTGACANNN
PBM
Weirauch et al.(2013)
pTH2340
0.759 0.791
SNAI1
M04441_2.00
Homo sapiens
NVCACCTGYN

NRCAGGTGBN
SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX
0.759 0.791
SNAI1
M04443_2.00
Homo sapiens
TRCACCTGYN

NRCAGGTGYA
SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX
0.759 0.791
SNAI1
M08303_2.00
Homo sapiens
NNNNGCACCTGCYNB

VNRGCAGGTGCNNNN
ChIP-seq
Schmitges et al.(2016)
O95863.MEME
0.759 0.791
SNAI1
M08886_2.00
Homo sapiens
VCACCTGB

VCAGGTGB
Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C
0.759 0.791
Snai1
M09002_2.00
Mus musculus
VCACCTGB

VCAGGTGB
Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C
0.759 0.791
SNAI1
M10201_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SNA_Q4
0.759 0.791
SNAI1
M10202_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SNA_Q6
0.759 0.791
SNAI1
M04442_2.00
Homo sapiens
NRCACCTGYN

NRCAGGTGYN
SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX
0.759 0.791
SNAI1
M04444_2.00
Homo sapiens
YRCACCTGYN

NRCAGGTGYR
SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX
0.759 0.791
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0197525 C2H2 ZF 222 244
FBpp0197525 C2H2 ZF 248 270
FBpp0197525 C2H2 ZF 276 298
FBpp0197525 C2H2 ZF 304 325

Links

Other C2H2 ZF family TFs
Other Drosophila sechellia TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACOC_0000630901 Angiostrongylus costaricensis ACOC_0000630901 N 0.000
ADIR003651 Anopheles dirus ADIR003651 N 0.000
AMEC004350 Anopheles melas AMEC004350 N 0.000
ASTEI10051 Anopheles stephensi ASTEI10051 N 0.000
fgenesh2_pg.scaffold_326000055 Branchiostoma floridae fgenesh2_pg.scaffold_326000055 N 0.000
GPUH_0000568401 Gongylonema pulchrum GPUH_0000568401 N 0.000
GPUH_0000569101 Gongylonema pulchrum GPUH_0000569101 N 0.000
ENSMEUG00000007629 Macropus eugenii ENSMEUG00000007629 N 0.000
GLI1 Sus scrofa ENSSSCG00000000443 N 0.000