OMERI01G09010 (Oryza meridionalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 OMERI01G09010 T124869_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
IDD5
M06807_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTTSYD

HRSAAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
IDD5_colamp_a
0.827 1.000
IDD5
M06808_2.00
Arabidopsis thaliana
WTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAW
Dap-seq
OMalley et al.(2016)
IDD5_col
0.827 1.000
AT1G14580
M06797_2.00
Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWWNNN
Dap-seq
OMalley et al.(2016)
At1g14580_col_a
0.827 0.953
AT1G14580
M06798_2.00
Arabidopsis thaliana
NNTTTTGTCKTTTWSYD

HRSWAAAMGACAAAANN
Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a
0.827 0.953
IDD4
M06809_2.00
Arabidopsis thaliana
WWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWW
Dap-seq
OMalley et al.(2016)
IDD4_col_a
0.822 0.930
IDD7
M06803_2.00
Arabidopsis thaliana
NDDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHHN
Dap-seq
OMalley et al.(2016)
IDD7_col_a
0.822 0.930
MGP
M06795_2.00
Arabidopsis thaliana
HNHDWTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAWHDND
Dap-seq
OMalley et al.(2016)
MGP_col_a
0.822 0.930
MGP
M06796_2.00
Arabidopsis thaliana
NNDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHNN
Dap-seq
OMalley et al.(2016)
MGP_colamp_a
0.822 0.930
NUC
M06822_2.00
Arabidopsis thaliana
NNNNNTTTTGTCKTYTWBYD

HRVWARAMGACAAAANNNNN
Dap-seq
OMalley et al.(2016)
NUC_col_a
0.798 0.907
NUC
M06823_2.00
Arabidopsis thaliana
NDTTTTGTCGTYTWNYD

HRNWARACGACAAAAHN
Dap-seq
OMalley et al.(2016)
NUC_colamp_a
0.798 0.907
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.792 0.907
IDD1
M06824_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTWBYD

HRVWAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a
0.788 0.907
IDD1
M06825_2.00
Arabidopsis thaliana
WDTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAHW
Dap-seq
OMalley et al.(2016)
At5g66730_col
0.788 0.907
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI01G09010.1 C2H2 ZF 101 122
OMERI01G09010.1 C2H2 ZF 121 147

Links

Other C2H2 ZF family TFs
Other Oryza meridionalis TFs

667 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00025p00196500 Amborella trichopoda AMTR_s00025p00196500 N 0.000
29843.m000288 Ricinus communis 29843.m000288 N 0.000
cassava11725.valid.m1 Manihot esculenta cassava11725.valid.m1 N 0.000
mgf002635m Mimulus guttatus mgf002635m N 0.000
Aquca_018_00160 Aquilegia coerulea Aquca_018_00160 N 0.000
Bostr.29044s0085 Boechera stricta Bostr.29044s0085 N 0.000
Ciclev10008843m.g Citrus clementina Ciclev10008843m.g N 0.000
Eucgr.C00067 Eucalyptus grandis Eucgr.C00067 N 0.000
evm.TU.supercontig_115.32 Carica papaya evm.TU.supercontig_115.32 N 0.000
Gorai.009G001500 Gossypium raimondii Gorai.009G001500 N 0.000
Lus10017146.g Linum usitatissimum Lus10017146.g N 0.000
MDP0000222923 Malus domestica MDP0000222923 N 0.000
orange1.1g019505m.g Citrus sinensis orange1.1g019505m.g N 0.000
SapurV1A.0001s2550 Salix purpurea SapurV1A.0001s2550 N 0.000
Pm008965 Prunus mume Pm008965 N 0.000
Cla005887 Citrullus lanatus Cla005887 N 0.000
Ca_15553 Cicer arietinum Ca_15553 N 0.000
BRADI1G34320 Brachypodium distachyon BRADI1G34320 N 0.000
GLYMA07G15620 Glycine max GLYMA07G15620 N 0.000
GSMUA_Achr3G05490_001 Musa acuminata GSMUA_Achr3G05490_001 N 0.000
GSMUA_Achr9G14080_001 Musa acuminata GSMUA_Achr9G14080_001 N 0.000
MTR_6g093020 Medicago truncatula MTR_6g093020 N 0.000
PGSC0003DMG400013699 Solanum tuberosum PGSC0003DMG400013699 N 0.000
POPTR_0006s07730 Populus trichocarpa POPTR_0006s07730 N 0.000
POPTR_0018s14340 Populus trichocarpa POPTR_0018s14340 N 0.000
PRUPE_ppa008652mg Prunus persica PRUPE_ppa008652mg N 0.000
Solyc05g047450.1 Solanum lycopersicum Solyc05g047450.1 N 0.000
TCM_039691 Theobroma cacao TCM_039691 N 0.000
MBD02 Vitis vinifera VIT_11s0065g01010 N 0.000
Ca_15552 Cicer arietinum Ca_15552 N 0.000
Thhalv10003457m.g Eutrema salsugineum Thhalv10003457m.g N 0.000