CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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scaffold_303767.1
(
Arabidopsis lyrata
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
scaffold_303767.1
T128304_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT2G15740
M06810_2.00
Arabidopsis thaliana
WCGHHDYCGWY
RWCGRHDDCGW
Dap-seq
OMalley et al.(2016)
AT2G15740_col_a
0.827
0.957
AT5G22990
M06821_2.00
Arabidopsis thaliana
WCGWHDTCGWYNHNN
NNDNRWCGAHDWCGW
Dap-seq
OMalley et al.(2016)
AT5G22990_col_a
0.825
0.913
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold_303767.1
C2H2 ZF
245
267
YTCPKCNGVFDTSQKFAAHMSSH
Links
Other
C2H2 ZF
family TFs
Other
Arabidopsis lyrata
TFs
22 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy