CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SMAR005079
(
Strigamia maritima
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
SMAR005079
T129069_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GLIS3
M02880_2.00
Homo sapiens
CTTYGTGGGGGGTM
KACCCCCCACRAAG
SELEX
Jolma et al.(2013)
GLIS3_1
0.773
0.842
GLIS3
M10169_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZNF515_01
0.773
0.842
GLIS3
M10170_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZNF515_Q6_01
0.773
0.842
GLIS3
M10171_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZNF515_Q6
0.773
0.842
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMAR005079-PA
C2H2 ZF
129
154
YNCLWMDCQTNCTQQEELVRHIEKKH
SMAR005079-PA
C2H2 ZF
163
190
FTCFWQGCPRKNRPFNARYKLLIHMRVH
SMAR005079-PA
C2H2 ZF
197
220
RCMFDGCTKAFSRSENLKIHVRSH
SMAR005079-PA
C2H2 ZF
226
250
YPCQYSGCSKAFSNSSDRAKHQRTH
SMAR005079-PA
C2H2 ZF
256
280
YACQIFGCSKRYTDPSSLRKHVKNH
Links
Other
C2H2 ZF
family TFs
Other
Strigamia maritima
TFs
61 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy