CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SPU_018909
(
Strongylocentrotus purpuratus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
SPU_018909
T129701_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BCL11A
M07926_2.00
Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV
ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha
0.821
0.921
BCL11A
M08881_2.00
Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV
Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A
0.821
0.921
BCL11A
M10187_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL11A_02
0.821
0.921
BCL11B
M04453_2.00
Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX
0.801
0.904
BCL11B
M04454_2.00
Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX
0.801
0.904
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SPU_018909-tr
C2H2 ZF
248
269
SCEFCGKTFKFQSNLVVHRRSH
SPU_018909-tr
C2H2 ZF
275
297
FKCHLCDHACSQASKLKRHMKTH
SPU_018909-tr
C2H2 ZF
633
655
DTCEYCGKQFKNCSNLTVHRRSH
SPU_018909-tr
C2H2 ZF
661
683
YKCQLCSYACAQSSKLTRHMKTH
SPU_018909-tr
C2H2 ZF
691
714
FKCEVCNMPFSVYSTLEKHMKKEH
Links
Other
C2H2 ZF
family TFs
Other
Strongylocentrotus purpuratus
TFs
124 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy