syd-9 (Caenorhabditis elegans)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 WBGene00044068 T131647_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Located in nuclear speck. Is expressed in muscle cell and neurons. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
syd-9
M00646_2.00		 Caenorhabditis elegans
DACHGTAH
DTACDGTH		 PBM
Narasimhan et al.(2015)
pTH10717		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00646_2.00 C2H2 ZF 20 43
M00646_2.00 C2H2 ZF 48 70
M00646_2.00 C2H2 ZF 76 99

DNA Binding Domains

Protein ID Domain From To Sequence
ZK867.1c C2H2 ZF 20 43
ZK867.1c C2H2 ZF 48 70
ZK867.1c C2H2 ZF 76 99
ZK867.1d C2H2 ZF 20 43
ZK867.1d C2H2 ZF 65 87
ZK867.1d C2H2 ZF 93 116

Links

Other C2H2 ZF family TFs
Other Caenorhabditis elegans TFs

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6 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action