RPH1 (Saccharomyces cerevisiae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 YER169W T131835_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RPH1
M00025_2.00		 Saccharomyces cerevisiae
NNHCCCCTAAN
NTTAGGGGDNN		 PBM
Badis et al.(2008)
RPH1_4571		 (Direct) (Direct)
RPH1
M01531_2.00		 Saccharomyces cerevisiae
YNMCCCCTWWWW
WWWWAGGGGKNR		 PBM
Zhu et al.(2009)
Rph1		 (Direct) (Direct)
RPH1
M07455_2.00		 Saccharomyces cerevisiae
NCCCCTWA
TWAGGGGN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0372.1		 (Direct) (Direct)
RPH1
M08522_2.00		 Saccharomyces cerevisiae
NCCCCTWA
TWAGGGGN		 Misc
DeBoer et al.(2011)
YER169W_547		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GIS1
M00019_2.00 		Saccharomyces cerevisiae
NCCCCTWDNN
NNHWAGGGGN		 PBM
Badis et al.(2008)
GIS1_4481 		0.816 0.911
GIS1
M07449_2.00 		Saccharomyces cerevisiae
HCCCCTWDN
NHWAGGGGD		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0306.1 		0.816 0.911
GIS1
M08515_2.00 		Saccharomyces cerevisiae
HCCCCTWDN
NHWAGGGGD		 Misc
DeBoer et al.(2011)
YDR096W_562 		0.816 0.911
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00025_2.00 C2H2 ZF 50 73
M00025_2.00 C2H2 ZF 79 100
M01531_2.00 C2H2 ZF 709 732
M01531_2.00 C2H2 ZF 738 759

DNA Binding Domains

Protein ID Domain From To Sequence
YER169W C2H2 ZF 709 732
YER169W C2H2 ZF 738 759

Links

Other C2H2 ZF family TFs
Other Saccharomyces cerevisiae TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27950.m000105 Ricinus communis 27950.m000105 I 0.000
28649.m000212 Ricinus communis 28649.m000212 I 0.000
30170.m014236 Ricinus communis 30170.m014236 I 0.000
CUC2 Arabidopsis lyrata Al_scaffold_0008_1815 I 0.000
AMTR_s00010p00266320 Amborella trichopoda AMTR_s00010p00266320 I 0.000
AMTR_s00022p00160350 Amborella trichopoda AMTR_s00022p00160350 I 0.000
AMTR_s00058p00136280 Amborella trichopoda AMTR_s00058p00136280 I 0.000
Aquca_002_00662 Aquilegia coerulea Aquca_002_00662 I 0.000
Aquca_009_00966 Aquilegia coerulea Aquca_009_00966 I 0.000
Aquca_033_00035 Aquilegia coerulea Aquca_033_00035 I 0.000
NAC098 Arabidopsis thaliana AT5G53950 D 0.000
NAC100 Arabidopsis thaliana AT5G61430 D 0.000
BGIOSGA001578 Oryza indica BGIOSGA001578 I 0.000
BGIOSGA002597 Oryza indica BGIOSGA002597 I 0.000
BGIOSGA008492 Oryza indica BGIOSGA008492 I 0.000
BGIOSGA014034 Oryza indica BGIOSGA014034 I 0.000
BGIOSGA022861 Oryza indica BGIOSGA022861 I 0.000
BGIOSGA026695 Oryza indica BGIOSGA026695 I 0.000
BGIOSGA029508 Oryza indica BGIOSGA029508 I 0.000
Bo2g043280 Brassica oleracea Bo2g043280 I 0.000
Bo2g089890 Brassica oleracea Bo2g089890 I 0.000
Bo5g002810 Brassica oleracea Bo5g002810 I 0.000
Bo6g120460 Brassica oleracea Bo6g120460 I 0.000
Bo9g113820 Brassica oleracea Bo9g113820 I 0.000
Bostr.0556s0555 Boechera stricta Bostr.0556s0555 I 0.000
Bostr.25375s0002 Boechera stricta Bostr.25375s0002 I 0.000
Bostr.26833s0095 Boechera stricta Bostr.26833s0095 I 0.000
Bostr.26833s0880 Boechera stricta Bostr.26833s0880 I 0.000
Bra008259 Brassica rapa Bra008259 I 0.000
Bra015750 Brassica rapa Bra015750 I 0.000
Bra022685 Brassica rapa Bra022685 I 0.000
BRADI3G46900 Brachypodium distachyon BRADI3G46900 I 0.000
BRADI4G37327 Brachypodium distachyon BRADI4G37327 I 0.000
BRADI5G12407 Brachypodium distachyon BRADI5G12407 I 0.000
Cagra.1968s0045 Capsella grandiflora Cagra.1968s0045 I 0.000
Cagra.27691s0001 Capsella grandiflora Cagra.27691s0001 I 0.000
Cagra.4622s0005 Capsella grandiflora Cagra.4622s0005 I 0.000
Carubv10009049m.g Capsella rubella Carubv10009049m.g I 0.000
Carubv10009451m.g Capsella rubella Carubv10009451m.g I 0.000
Carubv10028330m.g Capsella rubella Carubv10028330m.g I 0.000
cassava1757.valid.m1 Manihot esculenta cassava1757.valid.m1 I 0.000
cassava1758.valid.m1 Manihot esculenta cassava1758.valid.m1 I 0.000
cassava21580.m1 Manihot esculenta cassava21580.m1 I 0.000
cassava27052.m1 Manihot esculenta cassava27052.m1 I 0.000
cassava361.valid.m1 Manihot esculenta cassava361.valid.m1 I 0.000
cassava44869.m1 Manihot esculenta cassava44869.m1 I 0.000
Ca_22370 Cicer arietinum Ca_22370 I 0.000
Ca_22532 Cicer arietinum Ca_22532 I 0.000
chr4.CM0087.800.nd Lotus japonicus chr4.CM0087.800.nd I 0.000
Ciclev10001403m.g Citrus clementina Ciclev10001403m.g I 0.000
Ciclev10008619m.g Citrus clementina Ciclev10008619m.g I 0.000
Ciclev10012093m.g Citrus clementina Ciclev10012093m.g I 0.000
Cla010484 Citrullus lanatus Cla010484 I 0.000
Cla017258 Citrullus lanatus Cla017258 I 0.000
Cla023717 Citrullus lanatus Cla023717 I 0.000
Cucsa.122890 Cucumis sativus Cucsa.122890 I 0.000
estExt_gwp_gw1.C_460173 Physcomitrella patens estExt_gwp_gw1.C_460173 I 0.000
Eucgr.B00529 Eucalyptus grandis Eucgr.B00529 I 0.000
evm.TU.supercontig_131.88 Carica papaya evm.TU.supercontig_131.88 I 0.000
evm.TU.supercontig_286.12 Carica papaya evm.TU.supercontig_286.12 I 0.000
e_gw1.227.43.1 Physcomitrella patens e_gw1.227.43.1 I 0.000
e_gw1.259.32.1 Physcomitrella patens e_gw1.259.32.1 I 0.000
e_gw1.288.15.1 Physcomitrella patens e_gw1.288.15.1 D 0.000
e_gw1.327.11.1 Physcomitrella patens e_gw1.327.11.1 D 0.000
e_gw1.5.134.1 Physcomitrella patens e_gw1.5.134.1 I 0.000
F775_20638 Aegilops tauschii F775_20638 I 0.000
F775_26920 Aegilops tauschii F775_26920 N 0.000
F775_30297 Aegilops tauschii F775_30297 I 0.000
F775_32832 Aegilops tauschii F775_32832 N 0.000
fgenesh1_pg.scaffold_182000024 Physcomitrella patens fgenesh1_pg.scaffold_182000024 I 0.000
gene00971-v1.0-hybrid Fragaria vesca gene00971-v1.0-hybrid I 0.000
gene04424-v1.0-hybrid Fragaria vesca gene04424-v1.0-hybrid I 0.000
GLYMA05G00930 Glycine max GLYMA05G00930 I 0.000
GLYMA09G37050 Glycine max GLYMA09G37050 I 0.000
GLYMA13G05540 Glycine max GLYMA13G05540 I 0.000
GLYMA18G49620 Glycine max GLYMA18G49620 I 0.000
Gorai.002G067300 Gossypium raimondii Gorai.002G067300 I 0.000
Gorai.007G079900 Gossypium raimondii Gorai.007G079900 I 0.000
Gorai.007G323900 Gossypium raimondii Gorai.007G323900 I 0.000
Gorai.009G186000 Gossypium raimondii Gorai.009G186000 I 0.000
Gorai.010G051900 Gossypium raimondii Gorai.010G051900 I 0.000
Gorai.013G171300 Gossypium raimondii Gorai.013G171300 I 0.000
GRMZM2G003715 Zea mays GRMZM2G003715 I 0.000
GRMZM2G009892 Zea mays GRMZM2G009892 I 0.000
GRMZM2G139700 Zea mays GRMZM2G139700 I 0.000
GRMZM2G386163 Zea mays GRMZM2G386163 I 0.000
GRMZM5G898290 Zea mays GRMZM5G898290 N 0.000
GSMUA_Achr10G22350_001 Musa acuminata GSMUA_Achr10G22350_001 I 0.000
GSMUA_Achr7G23250_001 Musa acuminata GSMUA_Achr7G23250_001 I 0.000
GSMUA_Achr9G10040_001 Musa acuminata GSMUA_Achr9G10040_001 I 0.000
LPERR01G00270 Leersia perrieri LPERR01G00270 I 0.000
LPERR02G17680 Leersia perrieri LPERR02G17680 N 0.000
LPERR02G20100 Leersia perrieri LPERR02G20100 N 0.000
LPERR04G11740 Leersia perrieri LPERR04G11740 I 0.000
LPERR06G12840 Leersia perrieri LPERR06G12840 I 0.000
LPERR06G20430 Leersia perrieri LPERR06G20430 N 0.000
LPERR08G17020 Leersia perrieri LPERR08G17020 I 0.000
LPERR09G11330 Leersia perrieri LPERR09G11330 I 0.000
Lus10005537.g Linum usitatissimum Lus10005537.g I 0.000
Lus10041924.g Linum usitatissimum Lus10041924.g I 0.000
MDP0000129335 Malus domestica MDP0000129335 I 0.000
MDP0000135860 Malus domestica MDP0000135860 I 0.000
MDP0000232050 Malus domestica MDP0000232050 I 0.000
MDP0000310981 Malus domestica MDP0000310981 I 0.000
mgf002183m Mimulus guttatus mgf002183m I 0.000
mgf015836m Mimulus guttatus mgf015836m I 0.000
mgf018054m Mimulus guttatus mgf018054m N 0.000
mgf023466m Mimulus guttatus mgf023466m I 0.000
MLOC_13932 Hordeum vulgare MLOC_13932 I 0.000
MLOC_53744 Hordeum vulgare MLOC_53744 N 0.000
MLOC_65286 Hordeum vulgare MLOC_65286 I 0.000
MLOC_65714 Hordeum vulgare MLOC_65714 N 0.000
MTR_1g008740 Medicago truncatula MTR_1g008740 I 0.000
MTR_2g078700 Medicago truncatula MTR_2g078700 I 0.000
MTR_3g070030 Medicago truncatula MTR_3g070030 I 0.000
OB01G10300 Oryza brachyantha OB01G10300 I 0.000
OB02G29280 Oryza brachyantha OB02G29280 N 0.000
OB04G22290 Oryza brachyantha OB04G22290 I 0.000
OB06G22100 Oryza brachyantha OB06G22100 I 0.000
OBART01G00360 Oryza barthii OBART01G00360 I 0.000
OBART01G16620 Oryza barthii OBART01G16620 I 0.000
OBART02G21850 Oryza barthii OBART02G21850 I 0.000
OBART04G14970 Oryza barthii OBART04G14970 I 0.000
OBART06G13940 Oryza barthii OBART06G13940 I 0.000
OBART09G15220 Oryza barthii OBART09G15220 I 0.000
OBART11G01600 Oryza barthii OBART11G01600 N 0.000
OGLUM01G00350 Oryza glumaepatula OGLUM01G00350 I 0.000
OGLUM01G19440 Oryza glumaepatula OGLUM01G19440 I 0.000
OGLUM02G22030 Oryza glumaepatula OGLUM02G22030 I 0.000
OGLUM04G14830 Oryza glumaepatula OGLUM04G14830 I 0.000
OGLUM04G30580 Oryza glumaepatula OGLUM04G30580 I 0.000
OGLUM06G14810 Oryza glumaepatula OGLUM06G14810 I 0.000
OGLUM08G21360 Oryza glumaepatula OGLUM08G21360 I 0.000
OGLUM09G15820 Oryza glumaepatula OGLUM09G15820 I 0.000
OLONG_008218 Oryza longistaminata OLONG_008218 I 0.000
OLONG_009674 Oryza longistaminata OLONG_009674 I 0.000
OLONG_010248 Oryza longistaminata OLONG_010248 N 0.000
OLONG_019251 Oryza longistaminata OLONG_019251 I 0.000
OLONG_022415 Oryza longistaminata OLONG_022415 I 0.000
OLONG_023103 Oryza longistaminata OLONG_023103 I 0.000
OMERI01G15210 Oryza meridionalis OMERI01G15210 I 0.000
OMERI01G15230 Oryza meridionalis OMERI01G15230 I 0.000
OMERI02G21390 Oryza meridionalis OMERI02G21390 I 0.000
OMERI04G21180 Oryza meridionalis OMERI04G21180 N 0.000
OMERI07G04410 Oryza meridionalis OMERI07G04410 I 0.000
OMERI12G00500 Oryza meridionalis OMERI12G00500 N 0.000
ONIVA01G00280 Oryza nivara ONIVA01G00280 I 0.000
ONIVA01G18370 Oryza nivara ONIVA01G18370 I 0.000
ONIVA02G24080 Oryza nivara ONIVA02G24080 I 0.000
ONIVA03G33370 Oryza nivara ONIVA03G33370 I 0.000
ONIVA04G13100 Oryza nivara ONIVA04G13100 I 0.000
ONIVA04G29890 Oryza nivara ONIVA04G29890 I 0.000
ONIVA08G22710 Oryza nivara ONIVA08G22710 I 0.000
ONIVA09G15800 Oryza nivara ONIVA09G15800 I 0.000
OPUNC01G00320 Oryza punctata OPUNC01G00320 I 0.000
OPUNC02G19580 Oryza punctata OPUNC02G19580 I 0.000
OPUNC04G12870 Oryza punctata OPUNC04G12870 I 0.000
OPUNC06G13130 Oryza punctata OPUNC06G13130 I 0.000
OPUNC08G18240 Oryza punctata OPUNC08G18240 I 0.000
OPUNC09G13640 Oryza punctata OPUNC09G13640 I 0.000
orange1.1g016283m.g Citrus sinensis orange1.1g016283m.g I 0.000
orange1.1g018950m.g Citrus sinensis orange1.1g018950m.g I 0.000
orange1.1g047710m.g Citrus sinensis orange1.1g047710m.g I 0.000
ORGLA04G0119700 Oryza glaberrima ORGLA04G0119700 I 0.000
ORGLA04G0226100 Oryza glaberrima ORGLA04G0226100 N 0.000
ORGLA04G0270600 Oryza glaberrima ORGLA04G0270600 I 0.000
ORGLA06G0124600 Oryza glaberrima ORGLA06G0124600 I 0.000
ORGLA08G0177600 Oryza glaberrima ORGLA08G0177600 I 0.000
ORGLA09G0117400 Oryza glaberrima ORGLA09G0117400 I 0.000
ORGLA12G0187900 Oryza glaberrima ORGLA12G0187900 I 0.000
ORUFI01G00320 Oryza rufipogon ORUFI01G00320 I 0.000
ORUFI01G18470 Oryza rufipogon ORUFI01G18470 I 0.000
ORUFI02G22930 Oryza rufipogon ORUFI02G22930 I 0.000
ORUFI04G16370 Oryza rufipogon ORUFI04G16370 I 0.000
ORUFI04G32410 Oryza rufipogon ORUFI04G32410 I 0.000
ORUFI06G14810 Oryza rufipogon ORUFI06G14810 I 0.000
ORUFI08G22550 Oryza rufipogon ORUFI08G22550 I 0.000
ORUFI09G16430 Oryza rufipogon ORUFI09G16430 I 0.000
OS01G0104500 Oryza sativa OS01G0104500 I 0.000
OS01G0393100 Oryza sativa OS01G0393100 I 0.000
OS02G0579000 Oryza sativa OS02G0579000 I 0.000
OS04G0460600 Oryza sativa OS04G0460600 I 0.000
OS04G0691300 Oryza sativa OS04G0691300 I 0.000
OS06G0344900 Oryza sativa OS06G0344900 I 0.000
OS08G0511200 Oryza sativa OS08G0511200 I 0.000
OS09G0497900 Oryza sativa OS09G0497900 I 0.000
Pavir.Db00380 Panicum virgatum Pavir.Db00380 N 0.000
Pavir.Gb01850 Panicum virgatum Pavir.Gb01850 I 0.000
Pavir.J02772 Panicum virgatum Pavir.J02772 I 0.000
Pavir.J04049 Panicum virgatum Pavir.J04049 I 0.000
Pavir.J23199 Panicum virgatum Pavir.J23199 I 0.000
Pavir.J24971 Panicum virgatum Pavir.J24971 N 0.000
PGSC0003DMG400009920 Solanum tuberosum PGSC0003DMG400009920 I 0.000
PGSC0003DMG400029593 Solanum tuberosum PGSC0003DMG400029593 I 0.000
Pm011397 Prunus mume Pm011397 I 0.000
Pm028711 Prunus mume Pm028711 I 0.000
POPTR_0002s00730 Populus trichocarpa POPTR_0002s00730 I 0.000
POPTR_0005s27720 Populus trichocarpa POPTR_0005s27720 I 0.000
POPTR_0011s11600 Populus trichocarpa POPTR_0011s11600 I 0.000
PRUPE_ppa022384mg Prunus persica PRUPE_ppa022384mg I 0.000
PRUPE_ppa026810mg Prunus persica PRUPE_ppa026810mg I 0.000
SapurV1A.0016s0340 Salix purpurea SapurV1A.0016s0340 I 0.000
SapurV1A.0266s0070 Salix purpurea SapurV1A.0266s0070 I 0.000
SapurV1A.1325s0010 Salix purpurea SapurV1A.1325s0010 I 0.000
SapurV1A.2059s0010 Salix purpurea SapurV1A.2059s0010 I 0.000
Sb02g028870 Sorghum bicolor Sb02g028870 I 0.000
Sb04g023990 Sorghum bicolor Sb04g023990 N 0.000
Sb06g019010 Sorghum bicolor Sb06g019010 I 0.000
Sb09g008000 Sorghum bicolor Sb09g008000 N 0.000
SELMODRAFT_71307 Selaginella moellendorffii SELMODRAFT_71307 I 0.000
SELMODRAFT_86855 Selaginella moellendorffii SELMODRAFT_86855 I 0.000
Si006975m.g Setaria italica Si006975m.g N 0.000
Si010553m.g Setaria italica Si010553m.g I 0.000
Si017567m.g Setaria italica Si017567m.g N 0.000
Si030187m.g Setaria italica Si030187m.g I 0.000
Solyc07g062840.2 Solanum lycopersicum Solyc07g062840.2 I 0.000
Solyc08g074300.2 Solanum lycopersicum Solyc08g074300.2 I 0.000
TCM_031619 Theobroma cacao TCM_031619 I 0.000
TCM_034835 Theobroma cacao TCM_034835 I 0.000
TCM_035160 Theobroma cacao TCM_035160 I 0.000
Thhalv10012158m.g Eutrema salsugineum Thhalv10012158m.g I 0.000
Thhalv10013863m.g Eutrema salsugineum Thhalv10013863m.g I 0.000
Thhalv10019493m.g Eutrema salsugineum Thhalv10019493m.g I 0.000
Traes_2AL_57BF37A86 Triticum aestivum Traes_2AL_57BF37A86 N 0.000
Traes_2BL_6AEE8AC28 Triticum aestivum Traes_2BL_6AEE8AC28 N 0.000
Traes_2DL_DF7B995C9 Triticum aestivum Traes_2DL_DF7B995C9 N 0.000
Traes_7AL_74CC91D39 Triticum aestivum Traes_7AL_74CC91D39 I 0.000
Traes_7AL_BE3253C8F Triticum aestivum Traes_7AL_BE3253C8F N 0.000
Traes_7DL_BDD45DB24 Triticum aestivum Traes_7DL_BDD45DB24 I 0.000
TRIUR3_03895 Triticum urartu TRIUR3_03895 N 0.000
TRIUR3_09915 Triticum urartu TRIUR3_09915 N 0.000
TRIUR3_29250 Triticum urartu TRIUR3_29250 I 0.000
CUC3 Vitis vinifera VIT_18s0122g00800 I 0.000
VIT_19s0014g02200 Vitis vinifera VIT_19s0014g02200 I 0.000