CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MIG2
(
Saccharomyces cerevisiae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
YGL209W
T131837_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of filamentous growth of a population of unicellular organisms in response to starvation and regulation of transcription by RNA polymerase II. Located in mitochondrion and nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MIG2
M00027_2.00
Saccharomyces cerevisiae
NNCCCCRBNN
NNVYGGGGNN
PBM
Badis et al.(2008)
MIG2_2053
(Direct)
(Direct)
MIG2
M01533_2.00
Saccharomyces cerevisiae
NNCCCCRCNN
NNGYGGGGNN
PBM
Zhu et al.(2009)
Mig2
(Direct)
(Direct)
MIG2
M07457_2.00
Saccharomyces cerevisiae
CCCCRCN
NGYGGGG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0338.1
(Direct)
(Direct)
MIG2
M08525_2.00
Saccharomyces cerevisiae
CCCCRCN
NGYGGGG
Misc
DeBoer et al.(2011)
YGL209W_523
(Direct)
(Direct)
MIG2
M10394_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MIG2_02
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MIG3
M00023_2.00
Saccharomyces cerevisiae
NNCCCCGCAH
DTGCGGGGNN
PBM
Badis et al.(2008)
MIG3_2054
0.787
0.826
MIG3
M01529_2.00
Saccharomyces cerevisiae
CYCCRBNNN
NNNVYGGRG
PBM
Zhu et al.(2009)
Mig3
0.787
0.826
MIG3
M07453_2.00
Saccharomyces cerevisiae
CCCCRCN
NGYGGGG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0339.1
0.787
0.826
MIG3
M08520_2.00
Saccharomyces cerevisiae
CCCCRCN
NGYGGGG
Misc
DeBoer et al.(2011)
YER028C_501
0.787
0.826
For this family, TFs with SR scores >
0.755
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00027_2.00
C2H2 ZF
16
38
FRCDTCHRGFHRLEHKKRHLRTH
M00027_2.00
C2H2 ZF
44
68
HHCAFPGCGKSFSRSDELKRHMRTH
M01533_2.00
C2H2 ZF
17
39
FRCDTCHRGFHRLEHKKRHLRTH
M01533_2.00
C2H2 ZF
45
69
HHCAFPGCGKSFSRSDELKRHMRTH
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
YGL209W
C2H2 ZF
17
39
FRCDTCHRGFHRLEHKKRHLRTH
YGL209W
C2H2 ZF
45
69
HHCAFPGCGKSFSRSDELKRHMRTH
Links
Other
C2H2 ZF
family TFs
Other
Saccharomyces cerevisiae
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy