CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG001651.1
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG001651.1
T132981_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZBTB44
M01173_2.00
Homo sapiens
NNVMTGCAKYN
NRMTGCAKBNN
PBM
Lambert et al.(2019)
pTH11223
0.827
1.000
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG001651.1
C2H2 ZF
399
421
FQCPTCGVRFTRIQNLKQHMLIH
Alligator_sinensis_CCG001651.1
C2H2 ZF
427
449
FQCDRCGKKFTRAYSLKMHRLKH
Alligator_sinensis_CCG001651.1
C2H2 ZF
455
479
FRCQICSATFTSFGEYKHHMRVSRH
Alligator_sinensis_CCG001651.1
C2H2 ZF
487
511
YECKTCGAMFTNSGNLIVHLRSLNH
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
48 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy