ENSBTAP00000008947-D1 (Bos grunniens)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 ENSBTAP00000008947-D1 T134523_2.00 GigaDB (2015-Oct-22)
NCBI Gene Info:
This gene encodes a tumor suppressor protein containing transcriptional activation, DNA binding, and oligomerization domains. The encoded protein responds to diverse cellular stresses to regulate expression of target genes, thereby inducing cell cycle arrest, apoptosis, senescence, DNA repair, or changes in metabolism. Mutations in this gene are associated with a variety of human cancers, including hereditary cancers such as Li-Fraumeni syndrome. Alternative splicing of this gene and the use of alternate promoters result in multiple transcript variants and isoforms. Additional isoforms have also been shown to result from the use of alternate translation initiation codons from identical transcript variants (PMIDs: 12032546, 20937277). [provided by RefSeq, Dec 2016]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZNF180
M07614_2.00
Homo sapiens
CCSCVSBCSCCDCCHNBCCCB

VGGGVNDGGHGGSGVSBGSGG
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF180.RCADE.OriginalMapping
0.803 0.975
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000008947-D1 C2H2 ZF 354 376
ENSBTAP00000008947-D1 C2H2 ZF 382 404
ENSBTAP00000008947-D1 C2H2 ZF 410 432
ENSBTAP00000008947-D1 C2H2 ZF 438 460
ENSBTAP00000008947-D1 C2H2 ZF 466 488
ENSBTAP00000008947-D1 C2H2 ZF 494 516
ENSBTAP00000008947-D1 C2H2 ZF 522 544
ENSBTAP00000008947-D1 C2H2 ZF 550 572
ENSBTAP00000008947-D1 C2H2 ZF 578 600
ENSBTAP00000008947-D1 C2H2 ZF 606 628
ENSBTAP00000008947-D1 C2H2 ZF 634 656
ENSBTAP00000008947-D1 C2H2 ZF 662 684

Links

Other C2H2 ZF family TFs
Other Bos grunniens TFs

Invalid Input OrderBy

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action