Gfo_R006792 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R006792 T135748_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBTB18
M02916_2.00 		Homo sapiens
VMACATCTGGAWN
NWTCCAGATGTKB		 SELEX
Jolma et al.(2013)
ZNF238_1 		0.759 0.921
ZBTB18
M02917_2.00 		Homo sapiens
NMACATCTGGMHN
NDKCCAGATGTKN		 SELEX
Jolma et al.(2013)
ZNF238_2 		0.759 0.921
ZBTB18
M04585_2.00 		Homo sapiens
NMACATCTGGMHN
NDKCCAGATGTKN		 SELEX
Yin et al.(2017)
ZBTB18_eDBD_HT-SELEX 		0.759 0.921
ZBTB18
M08350_2.00 		Homo sapiens
MRCAKCTGG
CCAGMTGYK		 ChIP-seq
Schmitges et al.(2016)
Q99592_2-4.RCADE 		0.759 0.921
ZBTB18
M08928_2.00 		Homo sapiens
VMRCAKCTGGV
BCCAGMTGYKB		 Misc
Kulakovskiy et al.(2013)
ZBT18_HUMAN.H11MO.0.C 		0.759 0.921
ZBTB18
M10282_2.00 		Homo sapiens
NNMACATCTGGM
KCCAGATGTKNN		 Transfac
Matys et al.(2006)
V$RP58_01 		0.759 0.921
ZBTB18
M10283_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RP58_Q3 		0.759 0.921
ZBTB18
M04586_2.00 		Homo sapiens
NMACATCTGBHNN
NNDVCAGATGTKN		 SELEX
Yin et al.(2017)
ZBTB18_eDBD_Methyl-HT-SELEX 		0.759 0.921
ZBTB18
M08257_2.00 		Homo sapiens
NMGCAGCTGCKB
VMGCAGCTGCKN		 ChIP-seq
Najafabadi et al.(2015b)
ZNF238 		0.759 0.901
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R006792 C2H2 ZF 347 369
Gfo_R006792 C2H2 ZF 388 409
Gfo_R006792 C2H2 ZF 415 437
Gfo_R006792 C2H2 ZF 445 466

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Afo_R004692 Aptenodytes forsteri Afo_R004692 I 0.827
ENSFALG00000014898 Ficedula albicollis ENSFALG00000014898 I 0.827
Brh_R011012 Buceros rhinoceros Brh_R011012 I 0.827
Aan_R011644 Calypte anna Aan_R011644 I 0.827
Cmyd_10012301 Chelonia mydas Cmyd_10012301 I 0.825
ENSPSIG00000000487 Pelodiscus sinensis ENSPSIG00000000487 I 0.824
znf238.2.L Xenopus laevis XB-GENE-1219070 I 0.812
ENSPFOG00000022080 Poecilia formosa ENSPFOG00000022080 I 0.795
zbtb18 Gasterosteus aculeatus ENSGACG00000010518 I 0.795
zbtb18 Takifugu rubripes ENSTRUG00000000952 I 0.795
ENSXMAG00000018241 Xiphophorus maculatus ENSXMAG00000018241 I 0.795
zbtb18 Tetraodon nigroviridis ENSTNIG00000000430 I 0.795
zbtb18 Oryzias latipes ENSORLG00000004823 I 0.795
ENSSSCG00000030070 Sus scrofa ENSSSCG00000030070 I 0.793
ENSONIG00000000862 Oreochromis niloticus ENSONIG00000000862 I 0.792
ZBTB42 Meleagris gallopavo ENSMGAG00000015389 I 0.772
ZBTB42 Gallus gallus ENSGALG00000023025 I 0.772
Alligator_sinensis_CCG020881.1 Alligator sinensis Alligator_sinensis_CCG020881.1 I 0.772
Ogr11588 Ophisaurus gracilis Ogr11588 I 0.769
ENSCPOG00000023254 Cavia porcellus ENSCPOG00000023254 I 0.759
Aan_R007004 Calypte anna Aan_R007004 I 0.759
ZBTB18 Callithrix jacchus ENSCJAG00000017087 I 0.759
Afo_R000236 Aptenodytes forsteri Afo_R000236 I 0.759
ZBTB18 Dasypus novemcinctus ENSDNOG00000009334 I 0.759
ENSSTOG00000004290 Ictidomys tridecemlineatus ENSSTOG00000004290 I 0.759
ENSSHAG00000008659 Sarcophilus harrisii ENSSHAG00000008659 I 0.759
ZBTB18 Taeniopygia guttata ENSTGUG00000008247 I 0.759
ENSDORG00000000569 Dipodomys ordii ENSDORG00000000569 I 0.759
ENSTSYG00000004607 Tarsius syrichta ENSTSYG00000004607 I 0.759
ZBTB18 Bos taurus ENSBTAG00000000385 I 0.759
ZBTB18 Tursiops truncatus ENSTTRG00000000615 I 0.759
ENSAPLG00000002367 Anas platyrhynchos ENSAPLG00000002367 I 0.759
AAH70718 Xenopus laevis AAH70718 I 0.759
Pvit_01078 Pogona vitticeps Pvit_01078 I 0.759
zbtb18 Xenopus tropicalis XB-GENE-1003542 I 0.759
zbtb18.L Xenopus laevis XB-GENE-1003548 I 0.759
ZBTB42 Anolis carolinensis ENSACAG00000011451 I 0.759
Myotis_brandtii_ZNF238_10003031 Myotis brandtii Myotis_brandtii_ZNF238_10003031 I 0.759
Gfo_R011040 Geospiza fortis Gfo_R011040 I 0.759
ENSAMEG00000019750 Ailuropoda melanoleuca ENSAMEG00000019750 I 0.759
ZBTB18 Sorex araneus ENSSARG00000002984 I 0.759
Cmyd_10016351 Chelonia mydas Cmyd_10016351 I 0.759
ENSBTAP00000000497-D1 Bos grunniens ENSBTAP00000000497-D1 I 0.759
ENSP00000351539 Macaca fascicularis ENSP00000351539 I 0.759
Brh_R000160 Buceros rhinoceros Brh_R000160 I 0.759
Zfp238 Rattus norvegicus ENSRNOG00000004423 I 0.759
ZBTB18 Myotis lucifugus ENSMLUG00000011285 I 0.759
ZBTB18 Microcebus murinus ENSMICG00000007600 I 0.759
ZBTB18 Macaca mulatta ENSMMUG00000015664 I 0.759
ZBTB18 Monodelphis domestica ENSMODG00000006570 I 0.759
ZBTB18 Homo sapiens ENSG00000179456 D 0.759
ZBTB18 Meleagris gallopavo ENSMGAG00000011476 I 0.759
ENSMEUG00000009369 Macropus eugenii ENSMEUG00000009369 I 0.759
ZBTB18 Gorilla gorilla ENSGGOG00000028442 I 0.759
ENSFALG00000011473 Ficedula albicollis ENSFALG00000011473 I 0.759
ENSLACG00000009889 Latimeria chalumnae ENSLACG00000009889 I 0.759
ZBTB18 Loxodonta africana ENSLAFG00000002879 I 0.759
ENSMPUG00000015734 Mustela putorius furo ENSMPUG00000015734 I 0.759
Zbtb18 Mus musculus ENSMUSG00000063659 I 0.759
ZBTB18 Equus caballus ENSECAG00000018829 I 0.759
ENSPPYG00000000059 Pongo abelii ENSPPYG00000000059 I 0.759
ZBTB18 Pan troglodytes ENSPTRG00000002175 I 0.759
ZBTB18 Pteropus vampyrus ENSPVAG00000011441 I 0.759
ENSFCAG00000026731 Felis catus ENSFCAG00000026731 I 0.759
ZBTB18 Gallus gallus ENSGALG00000010705 I 0.759
ZBTB18 Erinaceus europaeus ENSEEUG00000014181 I 0.759
ZBTB18 Oryctolagus cuniculus ENSOCUG00000007968 I 0.759
ZBTB18 Ornithorhynchus anatinus ENSOANG00000010257 I 0.759
ZBTB18 Otolemur garnettii ENSOGAG00000013580 I 0.759
ZBTB18 Anolis carolinensis ENSACAG00000004296 I 0.759
ENSPANG00000021934 Papio anubis ENSPANG00000021934 I 0.759
znf238.2 Xenopus tropicalis XB-GENE-1219066 I 0.757
ZBTB42 Monodelphis domestica ENSMODG00000013701 I 0.757
ENSGMOG00000018718 Gadus morhua ENSGMOG00000018718 I 0.757
ENSSHAG00000008534 Sarcophilus harrisii ENSSHAG00000008534 I 0.757
ENSLOCG00000017349 Lepisosteus oculatus ENSLOCG00000017349 I 0.756