CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pvit_15628
(
Pogona vitticeps
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Pvit_15628
T137434_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Zfp410
M00140_2.00
Mus musculus
CYATCCCA
TGGGATRG
PBM
Badis et al.(2009)
Zfp410_3034
0.807
0.948
ZNF410
M02882_2.00
Homo sapiens
KVNTATTATGGGATGKN
NMCATCCCATAATANBM
SELEX
Jolma et al.(2013)
ZNF410_1
0.807
0.948
ZNF410
M04435_2.00
Homo sapiens
NTATTATGGGNTRB
VYANCCCATAATAN
SELEX
Yin et al.(2017)
ZNF410_eDBD_HT-SELEX
0.807
0.948
ZNF410
M04436_2.00
Homo sapiens
NTATTATGGGHTRB
VYADCCCATAATAN
SELEX
Yin et al.(2017)
ZNF410_eDBD_Methyl-HT-SELEX
0.807
0.948
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pvit_15628
C2H2 ZF
222
246
LKCTVEGCDRTFVWPAHFKYHLKTH
Pvit_15628
C2H2 ZF
252
276
FICPAKDCGKSFYVLQRLKVHMRTH
Pvit_15628
C2H2 ZF
282
306
FICTELGCGKQFTTAGNLKNHLRIH
Pvit_15628
C2H2 ZF
312
336
FLCEAQGCGRSFAEYSSLRKHLVVH
Pvit_15628
C2H2 ZF
342
365
HQCQICGKTFSQSGSRNVHMKKHH
Links
Other
C2H2 ZF
family TFs
Other
Pogona vitticeps
TFs
50 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy