Cucsa.379890 (Cucumis sativus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cucsa.379890 T137950_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G03510
M00860_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT14
0.800 0.783
AT5G04390
M01857_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Weirauch et al.(2014)
pTH7158
0.795 0.804
AT5G04390
M06819_2.00
Arabidopsis thaliana
HHHHWHCACTN

NAGTGDWDDDD
Dap-seq
OMalley et al.(2016)
At5g04390_col200_a
0.795 0.804
ZAT7
M01855_2.00
Arabidopsis thaliana
NVDBRCACTNNNN

NNNNAGTGYVHBN
PBM
Weirauch et al.(2014)
pTH7540
0.772 0.848
AT3G46070
M06813_2.00
Arabidopsis thaliana
HYHHYHTCACTYHHH

DDDRAGTGADRDDRD
Dap-seq
OMalley et al.(2016)
AT3G46070_col_a
0.762 0.804
AT3G53600
M01856_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7188
0.762 0.761
AT3G53600
M00858_2.00
Arabidopsis thaliana
NNNNRSWN

NWSYNNNN
PBM
Franco-Zorrilla et al.(2014)
ZAT18
0.762 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.379890.1 C2H2 ZF 14 36
Cucsa.379890.1 C2H2 ZF 59 81

Links

Other C2H2 ZF family TFs
Other Cucumis sativus TFs

378 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ANCCAN_03474 Ancylostoma caninum ANCCAN_03474 I 0.000
ASU_04305 Ascaris suum ASU_04305 I 0.000
Bm2389 Brugia malayi Bm2389 I 0.000
BTMF_0000225801 Brugia timori BTMF_0000225801 N 0.000
BXY_0740100 Bursaphelenchus xylophilus BXY_0740100 I 0.000
CBG17744 Caenorhabditis briggsae CBG17744 I 0.000
CBN13729 Caenorhabditis brenneri CBN13729 I 0.000
CJA08328 Caenorhabditis japonica CJA08328 I 0.000
CRE02711 Caenorhabditis remanei CRE02711 I 0.000
CRE10161 Caenorhabditis remanei CRE10161 I 0.000
DICVIV_10822 Dictyocaulus viviparus DICVIV_10822 I 0.000
DME_0000188101 Dracunculus medinensis DME_0000188101 I 0.000
EVEC_0001115901 Enterobius vermicularis EVEC_0001115901 I 0.000
GPLIN_001106000 Globodera pallida GPLIN_001106000 I 0.000
Hba_06510 Heterorhabditis bacteriophora Hba_06510 I 0.000
HCOI01716000 Haemonchus contortus HCOI01716000 I 0.000
HPLM_0001092501 Haemonchus placei HPLM_0001092501 I 0.000
L596_g3809 Steinernema carpocapsae L596_g3809 I 0.000
L889_g8621 Steinernema feltiae L889_g8621 I 0.000
L893_g27201 Steinernema glaseri L893_g27201 I 0.000
L898_g2799 Steinernema monticolum L898_g2799 I 0.000
LOAG_01074 Loa loa LOAG_01074 I 0.000
nAv.1.0.1.g09235 Acanthocheilonema viteae nAv.1.0.1.g09235 N 0.000
NBR_0001013001 Nippostrongylus brasiliensis NBR_0001013001 I 0.000
nDi.2.2.2.g03563 Dirofilaria immitis nDi.2.2.2.g03563 I 0.000
nhr-31 Caenorhabditis elegans WBGene00003625 I 0.000
OESDEN_12257 Oesophagostomum dentatum OESDEN_12257 I 0.000
Ppa-nhr-31 Pristionchus pacificus PPA24219 I 0.000
PTRK_0000207700 Parastrongyloides trichosuri PTRK_0000207700 I 0.000
RSKR_0000832300 Rhabditophanes kr3021 RSKR_0000832300 I 0.000
scaffold601-EXSNAP2012.19 Pristionchus exspectatus scaffold601-EXSNAP2012.19 I 0.000
SMUV_0000212501 Syphacia muris SMUV_0000212501 I 0.000
SPAL_0000620000 Strongyloides papillosus SPAL_0000620000 I 0.000
SSTP_0000662400 Strongyloides stercoralis SSTP_0000662400 I 0.000
SVE_1965700 Strongyloides venezuelensis SVE_1965700 I 0.000
WBGene00241236 Onchocerca volvulus WBGene00241236 I 0.000