fgenesh1_pg.scaffold_191000049 (Physcomitrella patens)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 fgenesh1_pg.scaffold_191000049 T139045_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_191000049
M01473_2.00		 Physcomitrella patens
NNNSCGCCRN
NYGGCGSNNN		 PBM
Najafabadi et al.(2015a)
pTH11165		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01473_2.00 C2H2 ZF 51 75
M01473_2.00 C2H2 ZF 105 128
M01473_2.00 C2H2 ZF 157 182

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_191000049 C2H2 ZF 267 291
fgenesh1_pg.scaffold_191000049 C2H2 ZF 321 344
fgenesh1_pg.scaffold_191000049 C2H2 ZF 373 398

Links

Other C2H2 ZF family TFs
Other Physcomitrella patens TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pg.scaffold_39000134 Physcomitrella patens fgenesh1_pg.scaffold_39000134 I 0.811
estExt_fgenesh1_pg.C_3030026 Physcomitrella patens estExt_fgenesh1_pg.C_3030026 I 0.811
estExt_fgenesh1_pg.C_4070009 Physcomitrella patens estExt_fgenesh1_pg.C_4070009 I 0.811
estExt_fgenesh1_pg.C_330060 Physcomitrella patens estExt_fgenesh1_pg.C_330060 I 0.811
fgenesh2_pg.scaffold_78000088 Physcomitrella patens fgenesh2_pg.scaffold_78000088 I 0.773