CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gw.69.4.1
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
gw.69.4.1
T140232_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw.69.4.1
C2H2 ZF
6
28
FKCGDCGYRGAKKYDLSRHIRIH
gw.69.4.1
C2H2 ZF
34
56
YKCDQCDYTAAEKSSLNYHLKKH
gw.69.4.1
C2H2 ZF
62
84
FMCGDCGYRATKQSDLTKHIRVH
gw.69.4.1
C2H2 ZF
90
113
YKCDQCDYSAKEKSSLNQHMIYKH
gw.69.4.1
C2H2 ZF
119
141
FMCGECGYRASKKSDLFRHMRTH
gw.69.4.1
C2H2 ZF
147
169
YKCDQCDYSAARKTTLDDHKTLH
gw.69.4.1
C2H2 ZF
175
197
YKCDTCEYRAARKTHLRLHMRTH
gw.69.4.1
C2H2 ZF
203
225
YKCNQCDYSAAQMSVLQYHLTKH
gw.69.4.1
C2H2 ZF
231
253
FICGECGYRTAKKSNLVIHMRVH
gw.69.4.1
C2H2 ZF
259
281
YKCDQCDYSAAHKPHLDEHLARH
gw.69.4.1
C2H2 ZF
287
309
FSCGQCGYRTAKKSDLSRHVHTH
gw.69.4.1
C2H2 ZF
315
337
FKCDQCDYSAADKASLKHHLAKH
gw.69.4.1
C2H2 ZF
343
365
FKCGQCGYGTTQRIALTIHMRVH
gw.69.4.1
C2H2 ZF
371
393
YKCDQCDYATAGRSNLNKHMTTH
gw.69.4.1
C2H2 ZF
399
421
YMCGECGYRTTRRTHLIQHIRTH
gw.69.4.1
C2H2 ZF
427
449
YKCDQCKYSTAYQSDLAKHKKTH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
1 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgenesh2_pm.scaffold_370000001
Branchiostoma floridae
fgenesh2_pm.scaffold_370000001
N
0.825