Ocbimv22026834m.g (Octopus bimaculoides)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ocbimv22026834m.g T141634_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Kah
M03690_2.00 		Drosophila melanogaster
NVCCACCTGTTN
NAACAGGTGGBN		 SELEX
Nitta et al.(2015)
CG17181_1 		0.771 0.867
Kah
M06137_2.00 		Drosophila melanogaster
VCCACCTGT
ACAGGTGGB		 B1H
Zhu et al.(2011)
CG17181_SANGER_5_FBgn0035144 		0.771 0.867
Kah
M06138_2.00 		Drosophila melanogaster
NVCCACCTGYHVVNN
NNBBDRCAGGTGGBN		 B1H
Zhu et al.(2011)
CG17181_SOLEXA_5_FBgn0035144 		0.771 0.867
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22026834m.p C2H2 ZF 64 86
Ocbimv22026834m.p C2H2 ZF 96 117
Ocbimv22026834m.p C2H2 ZF 121 143
Ocbimv22026834m.p C2H2 ZF 149 171
Ocbimv22026834m.p C2H2 ZF 177 198

Links

Other C2H2 ZF family TFs
Other Octopus bimaculoides TFs

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37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action