CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Aquca_010_00704
(
Aquilegia coerulea
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Aquca_010_00704
T142536_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT5G03510
M00860_2.00
Arabidopsis thaliana
NNHRSWN
NWSYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT14
0.800
0.783
AT5G04390
M01857_2.00
Arabidopsis thaliana
NNHRSWN
NWSYDNN
PBM
Weirauch et al.(2014)
pTH7158
0.795
0.804
AT5G04390
M06819_2.00
Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD
Dap-seq
OMalley et al.(2016)
At5g04390_col200_a
0.795
0.804
ZAT7
M01855_2.00
Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN
PBM
Weirauch et al.(2014)
pTH7540
0.771
0.783
AT3G46070
M06813_2.00
Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD
Dap-seq
OMalley et al.(2016)
AT3G46070_col_a
0.763
0.804
AT3G53600
M01856_2.00
Arabidopsis thaliana
NNHASWN
NWSTDNN
PBM
Weirauch et al.(2014)
pTH7188
0.762
0.761
AT3G53600
M00858_2.00
Arabidopsis thaliana
NNNNRSWN
NWSYNNNN
PBM
Franco-Zorrilla et al.(2014)
ZAT18
0.762
0.761
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aquca_010_00704.1
C2H2 ZF
40
62
FVCKTCNRHFSSFQALGGHRASH
Aquca_010_00704.1
C2H2 ZF
87
109
HECSICGLEFAIGQALGGHMRRH
Links
Other
C2H2 ZF
family TFs
Other
Aquilegia coerulea
TFs
378 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy