CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.1504s0017
(
Capsella grandiflora
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Cagra.1504s0017
T142645_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZFP5
M01851_2.00
Arabidopsis thaliana
DSWTNNNN
NNNNAWSH
PBM
Weirauch et al.(2014)
pTH7539
0.766
0.696
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.1504s0017.1.p
C2H2 ZF
27
49
YKCKYCPKRFDRSQALGGHQNAH
Links
Other
C2H2 ZF
family TFs
Other
Capsella grandiflora
TFs
97 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy