CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.8287s0005
(
Capsella grandiflora
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Cagra.8287s0005
T142685_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.8287s0005.1.p
C2H2 ZF
216
238
ICPQCNAKFSSVTTLVEHVEKTH
Cagra.8287s0005.1.p
C2H2 ZF
252
275
DVCPKCSRGFRDPVDLVNHIERDH
Links
Other
C2H2 ZF
family TFs
Other
Capsella grandiflora
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10023816m.g
Capsella rubella
Carubv10023816m.g
N
0.827
Bostr.25993s0598
Boechera stricta
Bostr.25993s0598
N
0.803
scaffold_403025.1
Arabidopsis lyrata
scaffold_403025.1
N
0.803