CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ca00708
(
Panicum virgatum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Pavir.Ca00708
T143326_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ca00708.1.p
C2H2 ZF
30
53
YKCEFCGVVRSKKSLIRAHVLQNH
Pavir.Ca00708.1.p
C2H2 ZF
77
99
HDCKECGMRFKKPAHLKQHMQSH
Pavir.Ca00708.1.p
C2H2 ZF
105
129
FVCHVDGCPLRYSRKDHLNRHLLTH
Pavir.Ca00708.1.p
C2H2 ZF
134
159
FVCPIEGCDRKFNIKGNMQRHVQEIH
Pavir.Ca00708.1.p
C2H2 ZF
171
195
FICPEVNCGKTFKYASKLKKHEESH
Pavir.Ca00708.2.p
C2H2 ZF
30
53
YKCEFCGVVRSKKSLIRAHVLQNH
Pavir.Ca00708.2.p
C2H2 ZF
77
99
HDCKECGMRFKKPAHLKQHMQSH
Pavir.Ca00708.2.p
C2H2 ZF
105
129
FVCHVDGCPLRYSRKDHLNRHLLTH
Pavir.Ca00708.2.p
C2H2 ZF
134
159
FVCPIEGCDRKFNIKGNMQRHVQEIH
Pavir.Ca00708.2.p
C2H2 ZF
171
195
FICPEVNCGKTFKYASKLKKHEESH
Links
Other
C2H2 ZF
family TFs
Other
Panicum virgatum
TFs
2 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si022364m.g
Setaria italica
Si022364m.g
N
0.808