CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J03392
(
Panicum virgatum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Pavir.J03392
T143403_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J03392.1.p
C2H2 ZF
558
580
HRCLECGACFQKPAHLKQHMQSH
Pavir.J03392.1.p
C2H2 ZF
586
610
FICPLEDCPFSYKRKDHLNRHMLKH
Pavir.J03392.1.p
C2H2 ZF
615
640
FGCTVDGCDRRFSIKANMQRHVKEFH
Pavir.J03392.1.p
C2H2 ZF
652
676
FICKEEGCNKAFKYLSKLKKHEESH
Pavir.J03392.1.p
C2H2 ZF
742
767
IKCTFDGCDHSFSSKSNLTKHMKACH
Pavir.J03392.1.p
C2H2 ZF
773
799
FTCRVAGCGKAFTYKHVRDNHEKSSAH
Links
Other
C2H2 ZF
family TFs
Other
Panicum virgatum
TFs
1 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Ab00169
Panicum virgatum
Pavir.Ab00169
N
0.817