Thhalv10014884m.g (Eutrema salsugineum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Thhalv10014884m.g T143560_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZAT7
M01855_2.00
Arabidopsis thaliana
NVDBRCACTNNNN

NNNNAGTGYVHBN
PBM
Weirauch et al.(2014)
pTH7540
0.803 0.935
AT5G03510
M00860_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT14
0.772 0.783
AT5G04390
M01857_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Weirauch et al.(2014)
pTH7158
0.771 0.761
AT5G04390
M06819_2.00
Arabidopsis thaliana
HHHHWHCACTN

NAGTGDWDDDD
Dap-seq
OMalley et al.(2016)
At5g04390_col200_a
0.771 0.761
AT3G46070
M06813_2.00
Arabidopsis thaliana
HYHHYHTCACTYHHH

DDDRAGTGADRDDRD
Dap-seq
OMalley et al.(2016)
AT3G46070_col_a
0.768 0.826
AT3G53600
M01856_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7188
0.761 0.717
AT3G53600
M00858_2.00
Arabidopsis thaliana
NNNNRSWN

NWSYNNNN
PBM
Franco-Zorrilla et al.(2014)
ZAT18
0.761 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10014884m C2H2 ZF 39 61
Thhalv10014884m C2H2 ZF 82 104

Links

Other C2H2 ZF family TFs
Other Eutrema salsugineum TFs

356 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00040p00057740 Amborella trichopoda AMTR_s00040p00057740 I 0.000
BGIOSGA019930 Oryza indica BGIOSGA019930 I 0.000
BRADI2G24120 Brachypodium distachyon BRADI2G24120 I 0.000
BRADI2G56096 Brachypodium distachyon BRADI2G56096 I 0.000
F775_25077 Aegilops tauschii F775_25077 I 0.000
GRMZM2G129247 Zea mays GRMZM2G129247 N 0.000
GRMZM2G132868 Zea mays GRMZM2G132868 I 0.000
GRMZM5G858197 Zea mays GRMZM5G858197 I 0.000
GSMUA_Achr10G10440_001 Musa acuminata GSMUA_Achr10G10440_001 I 0.000
GSMUA_Achr3G22470_001 Musa acuminata GSMUA_Achr3G22470_001 I 0.000
LOC_Os05g36160 Oryza sativa LOC_Os05g36160 D 0.000
LPERR05G14180 Leersia perrieri LPERR05G14180 I 0.000
MLOC_53321 Hordeum vulgare MLOC_53321 I 0.000
MLOC_64571 Hordeum vulgare MLOC_64571 I 0.000
OB05G25740 Oryza brachyantha OB05G25740 I 0.000
OBART05G17920 Oryza barthii OBART05G17920 I 0.000
OGLUM05G18920 Oryza glumaepatula OGLUM05G18920 I 0.000
OMERI05G15500 Oryza meridionalis OMERI05G15500 I 0.000
ONIVA05G18780 Oryza nivara ONIVA05G18780 I 0.000
OPUNC05G15820 Oryza punctata OPUNC05G15820 I 0.000
ORGLA05G0154900 Oryza glaberrima ORGLA05G0154900 I 0.000
ORUFI05G19090 Oryza rufipogon ORUFI05G19090 I 0.000
OS05G0437700 Oryza sativa OS05G0437700 I 0.000
Pavir.Ea03718 Panicum virgatum Pavir.Ea03718 I 0.000
Pavir.J05659 Panicum virgatum Pavir.J05659 I 0.000
Pavir.J06257 Panicum virgatum Pavir.J06257 I 0.000
Pavir.J36143 Panicum virgatum Pavir.J36143 I 0.000
Sb03g040970 Sorghum bicolor Sb03g040970 I 0.000
Si003247m.g Setaria italica Si003247m.g I 0.000
TRAES3BF019000220CFD_g Triticum aestivum TRAES3BF019000220CFD_g I 0.000
TRIUR3_19588 Triticum urartu TRIUR3_19588 I 0.000