Scas_Contig718.67 (Saccharomyces castellii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Scas_Contig718.67 T144980_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RPN4
M00017_2.00 		Saccharomyces cerevisiae
NNCGCCACCN
NGGTGGCGNN		 PBM
Badis et al.(2008)
RPN4_2137 		0.827 0.976
RPN4
M01525_2.00 		Saccharomyces cerevisiae
NWWWWWWWWN
NWWWWWWWWN		 PBM
Zhu et al.(2009)
Rpn4 		0.827 0.976
RPN4
M07447_2.00 		Saccharomyces cerevisiae
CGCCACY
RGTGGCG		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0373.1 		0.827 0.976
RPN4
M08511_2.00 		Saccharomyces cerevisiae
NNNRGTGGCRAM
KTYGCCACYNNN		 Misc
DeBoer et al.(2011)
YDL020C_1700 		0.827 0.976
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Scas_Contig718.67 C2H2 ZF 392 410
Scas_Contig718.67 C2H2 ZF 417 449

Links

Other C2H2 ZF family TFs
Other Saccharomyces castellii TFs

Invalid Input OrderBy

15 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action