18885_YNL027W (Saccharomyces mikatae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 18885_YNL027W T145941_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CRZ1
M00038_2.00
Saccharomyces cerevisiae
NNDCTRHGCCNN

NNGGCDYAGHNN
PBM
Badis et al.(2008)
CRZ1_4531
0.827 1.000
CRZ1
M07468_2.00
Saccharomyces cerevisiae
NNVMGCCHC

GDGGCKBNN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0285.1
0.827 1.000
CRZ1
M08541_2.00
Saccharomyces cerevisiae
NNVMGCCHC

GDGGCKBNN
Misc
DeBoer et al.(2011)
YNL027W_516
0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
18885_YNL027W C2H2 ZF 562 584
18885_YNL027W C2H2 ZF 590 612
18885_YNL027W C2H2 ZF 618 648

Links

Other C2H2 ZF family TFs
Other Saccharomyces mikatae TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK19166.1 Cannabis sativa PK19166.1 D 0.000
HAT3.1 Vitis vinifera VIT_03s0091g00290 I 0.000
Gorai.012G148900 Gossypium raimondii Gorai.012G148900 I 0.000
Lus10024826.g Linum usitatissimum Lus10024826.g I 0.000