CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.C_scaffold_1000086
(
Heterobasidion annosum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh2_pg.C_scaffold_1000086
T146253_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SCHCODRAFT_258883
M01464_2.00
Schizophyllum commune
NNCCCCTDD
HHAGGGGNN
PBM
Najafabadi et al.(2015a)
pTH10244
0.798
0.957
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.C_scaffold_1000086
C2H2 ZF
309
334
YACAVRGCGKCFARGEHLKRHVRSIH
fgenesh2_pg.C_scaffold_1000086
C2H2 ZF
340
364
HKCPVPGCGKDFSRHDNLGQHMRVH
Links
Other
C2H2 ZF
family TFs
Other
Heterobasidion annosum
TFs
32 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy