CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HCOI00212900
(
Haemonchus contortus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
HCOI00212900
T153792_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
sens
M03666_2.00
Drosophila melanogaster
TGCWSTGATTTATY
RATAAATCASWGCA
SELEX
Nitta et al.(2015)
sens_1
0.787
0.848
sens
M06056_2.00
Drosophila melanogaster
AAATCACDGC
GCHGTGATTT
B1H
Zhu et al.(2011)
sens_SANGER_10_FBgn0002573
0.787
0.848
sens
M06057_2.00
Drosophila melanogaster
NNNNAAATCACRGCH
DGCYGTGATTTNNNN
B1H
Zhu et al.(2011)
sens_SOLEXA_5_FBgn0002573
0.787
0.848
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
HCOI00212900.t1
C2H2 ZF
122
144
FKCSLCGKTFKRSSTLSTHLLIH
HCOI00212900.t1
C2H2 ZF
150
172
YPCQYCGKRFHQKSDMKKHTYIH
HCOI00212900.t1
C2H2 ZF
178
200
HKCTVCGKAFSQSSNLITHTRKH
HCOI00212900.t1
C2H2 ZF
206
228
FACDVCGRTFQRKVDRRRHREAH
Links
Other
C2H2 ZF
family TFs
Other
Haemonchus contortus
TFs
64 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy