HCOI02146900 (Haemonchus contortus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 HCOI02146900 T153882_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
klu
M03680_2.00 		Drosophila melanogaster
HCCRCCCACGCAH
DTGCGTGGGYGGD		 SELEX
Nitta et al.(2015)
klu_1 		0.777 0.793
klu
M03681_2.00 		Drosophila melanogaster
YMCGCCCMCGCAH
DTGCGKGGGCGKR		 SELEX
Nitta et al.(2015)
klu_2 		0.777 0.793
klu
M06114_2.00 		Drosophila melanogaster
MCACCCMCRCA
TGYGKGGGTGK		 B1H
Zhu et al.(2011)
klu_SANGER_10_FBgn0013469 		0.777 0.793
klu
M06115_2.00 		Drosophila melanogaster
NNNNMCACCCMCRCN
NGYGKGGGTGKNNNN		 B1H
Zhu et al.(2011)
klu_SOLEXA_5_FBgn0013469 		0.777 0.793
klu-1
M00637_2.00 		Caenorhabditis elegans
CDCCCMCV
BGKGGGHG		 PBM
Narasimhan et al.(2015)
pTH9355 		0.773 0.793
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HCOI02146900.t1 C2H2 ZF 443 466
HCOI02146900.t1 C2H2 ZF 483 505
HCOI02146900.t1 C2H2 ZF 511 533
HCOI02146900.t1 C2H2 ZF 539 561
HCOI02146900.t2 C2H2 ZF 433 456
HCOI02146900.t2 C2H2 ZF 473 495
HCOI02146900.t2 C2H2 ZF 501 523
HCOI02146900.t2 C2H2 ZF 529 551

Links

Other C2H2 ZF family TFs
Other Haemonchus contortus TFs

Invalid Input OrderBy

77 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action