CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L889_g7623
(
Steinernema feltiae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
L889_g7623
T154502_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
blmp-1
M08103_2.00
Caenorhabditis elegans
YTYTCHYTTTY
RAAARDGARAR
ChIP-seq
Mathelier et al.(2014)
MA0537.1
0.770
0.825
blmp-1
M08195_2.00
Caenorhabditis elegans
VACTTTCDCY
RGHGAAAGTB
ChIP-seq
Contrino et al.(2012)
Mw137
0.770
0.825
Blimp-1
M03692_2.00
Drosophila melanogaster
NNYACTTTCVYYN
NRRBGAAAGTRNN
SELEX
Nitta et al.(2015)
Blimp-1_1
0.759
0.816
Blimp-1
M06141_2.00
Drosophila melanogaster
ACTTTCACTTTY
RAAAGTGAAAGT
B1H
Zhu et al.(2011)
Blimp-1_NAR_FBgn0035625
0.759
0.816
Blimp-1
M06142_2.00
Drosophila melanogaster
RCTTTCMCTTTY
RAAAGKGAAAGY
B1H
Zhu et al.(2011)
Blimp-1_SANGER_5_FBgn0035625
0.759
0.816
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L889_g7623.t1
C2H2 ZF
609
631
YRCGLCSKTFGQLSNLKVHQRTH
L889_g7623.t1
C2H2 ZF
637
659
FKCTVCHKEFTQLAHLQKHHLVH
L889_g7623.t1
C2H2 ZF
665
687
HQCPVCQKRFSSTSNLKTHLRLH
L889_g7623.t1
C2H2 ZF
693
715
YPCDLCGSKFTQYVHLKLHKRLH
L889_g7623.t1
C2H2 ZF
721
742
FSCTMCGKKYISPSGLRTHWKT
Links
Other
C2H2 ZF
family TFs
Other
Steinernema feltiae
TFs
76 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy