CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nAv.1.0.1.g02699
(
Acanthocheilonema viteae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
nAv.1.0.1.g02699
T155011_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
klu
M03680_2.00
Drosophila melanogaster
HCCRCCCACGCAH
DTGCGTGGGYGGD
SELEX
Nitta et al.(2015)
klu_1
0.777
0.815
klu
M03681_2.00
Drosophila melanogaster
YMCGCCCMCGCAH
DTGCGKGGGCGKR
SELEX
Nitta et al.(2015)
klu_2
0.777
0.815
klu
M06114_2.00
Drosophila melanogaster
MCACCCMCRCA
TGYGKGGGTGK
B1H
Zhu et al.(2011)
klu_SANGER_10_FBgn0013469
0.777
0.815
klu
M06115_2.00
Drosophila melanogaster
NNNNMCACCCMCRCN
NGYGKGGGTGKNNNN
B1H
Zhu et al.(2011)
klu_SOLEXA_5_FBgn0013469
0.777
0.815
klu-1
M00637_2.00
Caenorhabditis elegans
CDCCCMCV
BGKGGGHG
PBM
Narasimhan et al.(2015)
pTH9355
0.764
0.815
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
nAv.1.0.1.t02699-RA
C2H2 ZF
489
512
YVCQHCGQAFGLHDRLAKHIASRH
nAv.1.0.1.t02699-RA
C2H2 ZF
529
551
HKCTMCNKSFGRSDMLTRHMRLH
nAv.1.0.1.t02699-RA
C2H2 ZF
557
579
YGCQVCGQVFSRSDHLSTHQRTH
nAv.1.0.1.t02699-RA
C2H2 ZF
585
607
YQCPQCNYAASRRDMITRHMRTH
Links
Other
C2H2 ZF
family TFs
Other
Acanthocheilonema viteae
TFs
59 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy