CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nRc.2.0.1.g30796
(
Romanomermis culicivorax
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
nRc.2.0.1.g30796
T155498_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SP3
M02910_2.00
Homo sapiens
VCCMCRCCCMY
RKGGGYGKGGB
SELEX
Jolma et al.(2013)
SP3_1
0.770
0.797
SP3
M04558_2.00
Homo sapiens
NRCCACGCCCMYH
DRKGGGCGTGGYN
SELEX
Yin et al.(2017)
SP3_eDBD_HT-SELEX
0.770
0.797
SP3
M08920_2.00
Homo sapiens
NBBNVSCCCCKCCCMBBBNN
NNVVVKGGGMGGGGSBNVVN
Misc
Kulakovskiy et al.(2013)
SP3_HUMAN.H11MO.0.B
0.770
0.797
Sp3
M08978_2.00
Mus musculus
NBBNVSCCCCKCCCMBBBNN
NNVVVKGGGMGGGGSBNVVN
Misc
Kulakovskiy et al.(2013)
SP3_MOUSE.H11MO.0.B
0.770
0.797
SP3
M10263_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP3_Q3_01
0.770
0.797
SP3
M10264_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP3_Q3
0.770
0.797
SP3
M04559_2.00
Homo sapiens
NRCCMCGCCCMCH
DGKGGGCGKGGYN
SELEX
Yin et al.(2017)
SP3_eDBD_Methyl-HT-SELEX
0.770
0.797
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
nRc.2.0.1.t30796-RA
C2H2 ZF
606
630
HECHIPNCGKRYGKTSHLRAHLRWH
nRc.2.0.1.t30796-RA
C2H2 ZF
636
660
FFCDWRNCMKRFTRSDELQRHIRTH
nRc.2.0.1.t30796-RA
C2H2 ZF
666
688
FVCDICQKRFIRSDHLAKHKRTH
Links
Other
C2H2 ZF
family TFs
Other
Romanomermis culicivorax
TFs
108 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy