CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SSTP_0000201100
(
Strongyloides stercoralis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
SSTP_0000201100
T157332_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
opa
M03668_2.00
Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV
SELEX
Nitta et al.(2015)
opa_1
0.767
0.793
opa
M05861_2.00
Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB
SMiLE-seq
Isakova et al.(2017)
Opa
0.767
0.793
opa
M06468_2.00
Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC
B1H
Mathelier et al.(2014)
MA0456.1
0.767
0.793
opa
M06062_2.00
Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC
B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002
0.767
0.793
opa
M06063_2.00
Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK
B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002
0.767
0.793
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SSTP_0000201100.2
C2H2 ZF
218
245
YICHWKDCTRHGKAFKAKYKLVNHLRVH
SSTP_0000201100.2
C2H2 ZF
251
273
FECEYCKKLFARSENLKIHKRIH
SSTP_0000201100.2
C2H2 ZF
279
303
FKCNHPGCDRTFANSSDRKKHMHVH
SSTP_0000201100.2
C2H2 ZF
309
333
YFCRYGGCDKSYTHPSSLRKHMKAH
Links
Other
C2H2 ZF
family TFs
Other
Strongyloides stercoralis
TFs
58 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy