CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCLT_0000586501
(
Thelazia callipaeda
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
TCLT_0000586501
T157726_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
opa
M03668_2.00
Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV
SELEX
Nitta et al.(2015)
opa_1
0.758
0.791
opa
M05861_2.00
Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB
SMiLE-seq
Isakova et al.(2017)
Opa
0.758
0.791
opa
M06468_2.00
Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC
B1H
Mathelier et al.(2014)
MA0456.1
0.758
0.791
opa
M06062_2.00
Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC
B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002
0.758
0.791
opa
M06063_2.00
Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK
B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002
0.758
0.791
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
TCLT_0000586501-mRNA-1
C2H2 ZF
190
217
HICQWKDCSRKGKVFKAKYKLVNHIRVH
TCLT_0000586501-mRNA-1
C2H2 ZF
223
245
FPCTMCSKVFARSENLKIHQRTH
TCLT_0000586501-mRNA-1
C2H2 ZF
251
275
FTCTHPGCDRKFANSSDRKKHMHVH
TCLT_0000586501-mRNA-1
C2H2 ZF
281
304
YECKINGCKKSYTHPSSLRKHLKF
Links
Other
C2H2 ZF
family TFs
Other
Thelazia callipaeda
TFs
59 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy